[Home] | [Total List]

[193637_at] Zinc finger, C4 type (two domains)

Description E02H1.7 /REP_DB=WormBase Gene ID /WP=CE01542 /GEN=nhr-19 /TR=SW:Q09528 /GB=CAA87381.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_high1_10_10 > 14      6grp_total > 13      4grp_total > 39      6grp_cgc > 41      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1752
1 2 3 4 range
A 1963.2
(3)
P 		460.5
(-2.2)
A 		239.8
(-3)
A 		683.3
(-1.5)
P 		1723
B 1726.2
(3)
P 		242
(-3)
A 		249.9
(-3)
A 		648.3
(-1.4)
P 		1484
C 1801.6
(3)
P 		347.9
(-2.5)
A 		211.5
(-3)
M 		787.5
(-0.8)
P 		1590
avr 1830.3
(3) 		350.1
(-2.6) 		233.7
(-3) 		706.4
(-1.2) 		1597

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 681
1 2 3 4 5 6 range
A 916.6
(3)
P 		681.7
(0.8)
P 		538.5
(-0.6)
P 		566
(-0.3)
P 		437.6
(-1.5)
P 		283.6
(-3)
A 		633
B 831.9
(3)
P 		816.5
(2.8)
P 		494.6
(-1.1)
P 		602.6
(0.2)
P 		516
(-0.8)
P 		337.8
(-3)
P 		494
C 701
(0.7)
P 		957.8
(3)
P 		634.2
(0.2)
P 		455.1
(-1.4)
M 		369
(-2.2)
P 		276.4
(-3)
P 		681
avr 816.5
(3) 		818.7
(3) 		555.8
(-0) 		541.2
(-0.2) 		440.9
(-1.4) 		299.3
(-3) 		519
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 657
1 2 3 4 range
A 714.8
(3)
P 		100
(-2.7)
A 		62.7
(-3)
A 		100
(-2.7)
P 		652
B 550.5
(3)
P 		59.8
(-3)
A 		57.9
(-3)
A 		138.2
(-2)
P 		493
C 596.4
(3)
P 		100
(-2.7)
A 		73.7
(-3)
M 		132.8
(-2.3)
P 		523
avr 620.6
(3) 		86.6
(-2.8) 		64.8
(-3) 		123.7
(-2.4) 		556

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 169
(0.5)
P 		242.4
(3)
P 		117.3
(-1.3)
P 		143.5
(-0.4)
P 		132
(-0.8)
P 		69.1
(-3)
A 		173
B 289.5
(3)
P 		271.8
(2.4)
P 		120.1
(-3)
P 		159.6
(-1.6)
P 		209.7
(0.2)
P 		126
(-2.8)
P 		169
C 259.8
(2)
P 		292.2
(3)
P 		161.4
(-0.9)
P 		91.5
(-3)
M 		119.4
(-2.2)
P 		92.5
(-3)
P 		201
avr 239.4
(2) 		268.8
(3) 		132.9
(-1.7) 		131.5
(-1.8) 		153.7
(-1) 		95.9
(-3) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2732
Sequence Type Exemplar sequence
Representative Public ID E02H1.7 NCBI
Target Description E02H1.7 /REP_DB=WormBase Gene ID /WP=CE01542 /GEN=nhr-19 /TR=SW:Q09528 /GB=CAA87381.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063665(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063665 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-19) (nhr-19) mRNA, complete cds. 10/11 None
SNAP00000041926 ENSEMBL cdna:SNAP chromosome:CEL140:II:9598385:9600798:-1 10/11 None
GENEFINDER00000041929 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9598385:9600842:-1 10/11 None
E02H1.7 ENSEMBL cdna:known chromosome:CEL140:II:9598107:9605152:-1 gene:E02H1.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9598381-9600795(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-19
Ensembl E02H1.7
Entrez Gene 174512 Entrez gene
SwissProt Q09528 EMBL-EBI
WormBase CE30271 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD27185 Hypothetical protein E02H1.7 [Caenorhabditis elegans] emb|CAA87381.2| Hypothetical protein E02H1.7 [Caenorhabditis elegans] ref|NP_496066.2| Nuclear Hormone Receptor family member (nhr-19) [Caenorhabditis elegans] sp|Q09528|NHR19_CAEEL Nuclear hormone receptor family member nhr-19 0.0
blast T20416 hypothetical protein E02H1.7 - Caenorhabditis elegans 0.0
blast CAE56399 Hypothetical protein CBG24087 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.5E-46
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-33
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.5E-46
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-33
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.5E-46
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-33
Sequence
Target Sequence 
>C. ELEGANS:193637_AT
ggagcatggctattacacagcacaggcaaatattgatgacgtatggctcatcacaaatgg
aacttgtatgccgagaaatgtcgagaagttagaggaaggatgtaaaatttccgtctccgc
tgatcgtcgatggcgtcaagagaagctgtacaaacaaatgactgattgttgcatcgatga
agtggccactccactgagaaatctcaaattgagcccacaggagattgttgtcatcaagat
tattgtgctcttcaattgtggatgctcttctggtgagatttccaagacattttctagaaa
gttgaaaataattcttccagattactctgaaatcaccgaagcttctcgtcgcattgtgct
aactttccgtaataaagttgtgtcagcattattcgcttattatgaaagtgttggactgca
aaactatgcagaaaggttcgggaatttagttctgatgctgtccggagtttcatcggcggc
atcatcaatgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCATGGCTATTACACAGCACAG 68 521 783 Antisense
GGATGTAAAATTTCCGTCTCCGCTG 656 513 880 Antisense
TCCGCTGATCGTCGATGGCGTCAAG 516 595 898 Antisense
GTGGCCACTCCACTGAGAAATCTCA 142 493 964 Antisense
GAGCCCACAGGAGATTGTTGTCATC 242 387 993 Antisense
TGTGCTCTTCAATTGTGGATGCTCT 435 555 1026 Antisense
GGATGCTCTTCTGGTGAGATTTCCA 662 513 1042 Antisense
ACTCTGAAATCACCGAAGCTTCTCG 583 97 1106 Antisense
CTCGTCGCATTGTGCTAACTTTCCG 95 233 1127 Antisense
TTAGTTCTGATGCTGTCCGGAGTTT 243 679 1228 Antisense
TTCATCGGCGGCATCATCAATGTTG 342 687 1251 Antisense
Sequence Source Affymetrix Proprietary Database