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[193636_s_at]

Description F38B7.1A /REP_DB=WormBase Gene ID /WP=CE20756 /TR=Q20155 /GB=CAA98475.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 86      6grp_total > 39      4grp_total > 29      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 681
1 2 3 4 range
A 1207.2
(0.7)
P 		958
(-2.5)
P 		914.6
(-3)
P 		1395
(3)
P 		480
B 1064.8
(1.1)
P 		1081.5
(1.3)
P 		714
(-3)
P 		1222.6
(3)
P 		509
C 1287.2
(3)
P 		1101.4
(0.8)
P 		785.7
(-3)
P 		1023.3
(-0.2)
P 		502
avr 1186.4
(2.6) 		1047
(0.6) 		804.8
(-3) 		1213.6
(3) 		409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1068
1 2 3 4 5 6 range
A 966.6
(-0.6)
P 		1341.7
(1.7)
P 		578.1
(-3)
P 		771.5
(-1.8)
P 		1128.6
(0.4)
P 		1552.8
(3)
P 		975
B 1166.2
(2.6)
P 		1196.9
(3)
P 		713
(-3)
P 		712.6
(-3)
P 		999.1
(0.5)
P 		916.6
(-0.5)
P 		484
C 1594.8
(3)
P 		1152.5
(0.5)
P 		1071.2
(0.1)
P 		527.1
(-3)
P 		1544.2
(2.7)
P 		984.6
(-0.4)
P 		1068
avr 1242.5
(3) 		1230.4
(2.9) 		787.4
(-1.8) 		670.4
(-3) 		1224
(2.8) 		1151.3
(2) 		572
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 439.5
(3)
P 		208
(-2.9)
P 		239.1
(-2.1)
P 		204.2
(-3)
P 		235
B 339.6
(3)
P 		267.1
(0.5)
P 		165.4
(-3)
P 		260.5
(0.3)
P 		174
C 426.1
(3)
P 		316.7
(0.4)
P 		273.9
(-0.6)
P 		172.5
(-3)
P 		254
avr 401.7
(3) 		263.9
(-1.4) 		226.1
(-2.6) 		212.4
(-3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 485
1 2 3 4 5 6 range
A 178.2
(-2.1)
P 		477.2
(3)
P 		125.9
(-3)
P 		195.7
(-1.8)
P 		340.6
(0.7)
P 		378
(1.3)
P 		351
B 405.8
(3)
P 		398.4
(2.8)
P 		173.1
(-3)
P 		188.7
(-2.6)
P 		405.9
(3)
P 		341.8
(1.3)
P 		233
C 591.1
(3)
P 		351.7
(0)
P 		272.6
(-0.9)
P 		106
(-3)
P 		499.7
(1.9)
P 		329.6
(-0.2)
P 		485
avr 391.7
(2.4) 		409.1
(2.8) 		190.5
(-2.4) 		163.5
(-3) 		415.4
(3) 		349.8
(1.4) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193636_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14442
Sequence Type Exemplar sequence
Representative Public ID F38B7.1A NCBI
Target Description F38B7.1A /REP_DB=WormBase Gene ID /WP=CE20756 /TR=Q20155 /GB=CAA98475.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073525(11), NM_073526(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073525 NCBI Caenorhabditis elegans F38B7.1a (F38B7.1) mRNA, complete cds. 11/11 None
NM_073526 NCBI Caenorhabditis elegans F38B7.1b (F38B7.1) mRNA, complete cds. 10/11 None
SNAP00000015620 ENSEMBL cdna:SNAP chromosome:CEL140:V:11541535:11542581:1 10/11 None
GENEFINDER00000015631 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11530345:11542581:1 10/11 None
F38B7.1a ENSEMBL cdna:known chromosome:CEL140:V:11530420:11543810:1 gene:F38B7.1 11/11 None
F38B7.1b ENSEMBL cdna:known chromosome:CEL140:V:11535157:11542773:1 gene:F38B7.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11530545-11543061(+) 100.0 100.0
Public Domain and Genome References
Ensembl F38B7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98475 Hypothetical protein F38B7.1a [Caenorhabditis elegans] ref|NP_505926.2| F38B7.1a [Caenorhabditis elegans] 0.0
blast CAA98476 Hypothetical protein F38B7.1b [Caenorhabditis elegans] ref|NP_505927.2| F38B7.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.1E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.5E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.1E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.5E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.1E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.5E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.1E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.5E-13
Sequence
Target Sequence 
>C. ELEGANS:193636_S_AT
cagttcctcgacatccaaagtacaagacagaggcttgtcagtcattccatcaaagtggat
attgtccatatggtccaagatgccatttcattcacaatgaacctccaagtgctcagagtc
agtattcaacaccgatctccactccagtaccacatcaaactacaccttctctttatgcgt
cacagtatcataatgtcacaatgaagcagcaacaaccaactcagaatgccagtaatgttc
cgaataatgttcttcaacgtgtctattctttgccaaacggaggatacggtagtgctggag
aatcaccgccatgtagttcaaatgactctggaagtgaatcgccgaacggaagtttctcgc
ctggattggatcttgaagatagtggaccattctctgctggattcctttccgcttcaccac
acaagttgcaacagcagaaaacaaatgcggcaccacgtgttccgacgagtagattcctat
cgtacgatcagtcaaatttcccgatgtcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTTCCTCGACATCCAAAGTACAA 615 203 701 Antisense
AGGCTTGTCAGTCATTCCATCAAAG 666 51 731 Antisense
GAACCTCCAAGTGCTCAGAGTCAGT 22 345 799 Antisense
AGTCAGTATTCAACACCGATCTCCA 349 61 817 Antisense
ATCAAACTACACCTTCTCTTTATGC 13 27 854 Antisense
AGTGCTGGAGAATCACCGCCATGTA 686 59 991 Antisense
GACTCTGGAAGTGAATCGCCGAACG 391 373 1024 Antisense
GGAAGTTTCTCGCCTGGATTGGATC 610 531 1048 Antisense
GATAGTGGACCATTCTCTGCTGGAT 383 423 1078 Antisense
GCACCACGTGTTCCGACGAGTAGAT 525 313 1150 Antisense
GATCAGTCAAATTTCCCGATGTCCT 221 421 1186 Antisense
Sequence Source Affymetrix Proprietary Database