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[193631_at] tyrosine-protein kinase (KIN15/KIN16 subfamily)

Description R09D1.13 /REP_DB=WormBase Gene ID /WP=CE03554 /TR=Q21868 /GB=CAA93872.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase (KIN15-KIN16 subfamily)
Cluster 6grp_total > 63      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 11.3
(-2.2)
A 		34.3
(1.2)
A 		5.7
(-3)
A 		46.5
(3)
A 		41
B 11.5
(0.7)
A 		11.2
(0.4)
A 		6.8
(-3)
A 		14.5
(3)
A 		8
C 8.1
(-2.9)
A 		15.1
(-2.4)
A 		6
(-3)
A 		91
(3)
A 		85
avr 10.3
(-2.4) 		20.2
(-1.1) 		6.2
(-3) 		50.7
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6
(-2.3)
A 		8.8
(-1.4)
A 		22.5
(3)
A 		3.8
(-3)
A 		14.1
(0.3)
A 		16.6
(1.1)
A 		19
B 6.6
(-2)
A 		5.4
(-3)
A 		11.4
(2.1)
A 		12.5
(3)
A 		8.8
(-0.1)
A 		6.8
(-1.8)
A 		7
C 5.8
(-0.5)
A 		10.3
(2.7)
A 		8.1
(1.2)
A 		10.7
(3)
A 		2.2
(-3)
A 		3
(-2.4)
A 		9
avr 6.1
(-3) 		8.2
(-1.4) 		14
(3) 		9
(-0.8) 		8.4
(-1.3) 		8.8
(-0.9) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.1
(-0.4)
A 		7.5
(3)
A 		1.5
(-3)
A 		6.8
(2.3)
A 		6
B 3.7
(3)
A 		2.8
(0.4)
A 		1.6
(-3)
A 		3.1
(1.3)
A 		2
C 2.7
(-2.7)
A 		4.3
(-2)
A 		2.1
(-3)
A 		15.3
(3)
A 		13
avr 3.5
(-1.4) 		4.9
(-0.1) 		1.7
(-3) 		8.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		3.1
(0.2)
A 		4.9
(3)
A 		1
(-3)
A 		4.3
(2.1)
A 		4
(1.6)
A 		4
B 2.3
(-1.3)
A 		1.8
(-3)
A 		2.8
(0.3)
A 		3.3
(2)
A 		3.6
(3)
A 		2.5
(-0.7)
A 		2
C 2.2
(0.6)
A 		3.2
(3)
A 		2.1
(0.4)
A 		2.1
(0.4)
A 		0.7
(-3)
A 		1
(-2.3)
A 		3
avr 1.9
(-3) 		2.7
(0.4) 		3.3
(3) 		2.1
(-2.1) 		2.9
(1.3) 		2.5
(-0.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2705
Sequence Type Exemplar sequence
Representative Public ID R09D1.13 NCBI
Target Description R09D1.13 /REP_DB=WormBase Gene ID /WP=CE03554 /TR=Q21868 /GB=CAA93872.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase (KIN15-KIN16 subfamily)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063621 NCBI Caenorhabditis elegans R09D1.13 (R09D1.13) mRNA, complete cds. 11/11 None
R09D1.13 ENSEMBL cdna:known chromosome:CEL140:II:9443736:9445377:-1 gene:R09D1.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010205 5/11 Cross Hyb Matching Probes None
GENEFINDER00000010217 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9443732-9445374(-) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine-protein kinase (KIN15/KIN16 subfamily)
Ensembl R09D1.13
Entrez Gene 187740 Entrez gene
SwissProt Q21868 EMBL-EBI
WormBase CE03554 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93872 Hypothetical protein R09D1.13 [Caenorhabditis elegans] ref|NP_496022.1| R09D1.13 [Caenorhabditis elegans] 0.0
blast CAA91146 Hypothetical protein C08H9.5 [Caenorhabditis elegans] ref|NP_496130.1| Overexpression Longevity Determinant family member (old-1) [Caenorhabditis elegans] 6.0E-61
blast CAA90147 Hypothetical protein ZK938.5 [Caenorhabditis elegans] ref|NP_496123.1| Overexpression Longevity Determinant family member (old-2) [Caenorhabditis elegans] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.046
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496022.1 1 5-24
R09D1.13 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:193631_AT
ggggcttgacgagttttgtgtttctgatctccattcgtttgcatttcaaatcgccaatgg
aatggaatatttaactcacattccggtgattcatcgatttctagctctacgtaacatatt
tttaaaaaggaacaaaacaattcggatagccaacttcggactttcaaaaaacgtcaatga
ttacagaataatcgatagtatggatactcctgttccactttattggatggcaccagaaag
ttacaatgaacttattttcaatgagaagacggatgtctggtcatttggagtatgtcttta
cgagttatattcattgggtgaagatccttacgaaaatgtgaaaacacttttcgaccactt
gatggaatacttggagaaaggcaatcgactctcgaaaccgaaatatattgattctccgga
aatattcgatttcatgaaaatatgctggaacttcaaaccggaaactcgtccttgtttctc
cgattgtgctcagttttttaaatctcatttgcaagagtttccccctgcgttgttggagca
aacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGCTTGACGAGTTTTGTGTTTCT 649 497 594 Antisense
CTGATCTCCATTCGTTTGCATTTCA 20 239 617 Antisense
AACTCACATTCCGGTGATTCATCGA 362 141 666 Antisense
GATTCATCGATTTCTAGCTCTACGT 144 431 681 Antisense
TCGGATAGCCAACTTCGGACTTTCA 525 605 735 Antisense
ATACTCCTGTTCCACTTTATTGGAT 534 23 797 Antisense
AAAACACTTTTCGACCACTTGATGG 131 131 934 Antisense
GAAAGGCAATCGACTCTCGAAACCG 151 361 969 Antisense
TTTCTCCGATTGTGCTCAGTTTTTT 633 669 1068 Antisense
TCTCATTTGCAAGAGTTTCCCCCTG 308 611 1096 Antisense
CCCCCTGCGTTGTTGGAGCAAACAC 49 261 1114 Antisense
Sequence Source Affymetrix Proprietary Database