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[193629_at] steroidogenic acute regulatory protein like

Description F52F12.7 /REP_DB=WormBase Gene ID /WP=CE10852 /TR=SW:O17883 /GB=CAB05736.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=steroidogenic acute regulatory protein like
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 63      4grp_high_8_8 > 19      6grp_highest_nonorm > 56      6grp_total > 63      4grp_total > 29      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 1166.2
(1.9)
P 		857
(-2.5)
P 		823.4
(-3)
P 		1242.2
(3)
P 		419
B 1086.7
(1.1)
P 		1203
(3)
P 		842.3
(-3)
P 		1110.4
(1.5)
P 		361
C 1260.3
(3)
P 		1258.8
(3)
P 		1058.9
(-3)
P 		1242.5
(2.5)
P 		201
avr 1171.1
(2.4) 		1106.3
(1.1) 		908.2
(-3) 		1198.4
(3) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1005
1 2 3 4 5 6 range
A 1445
(-3)
P 		1437.3
(-3)
P 		2409.9
(3)
P 		2333.5
(2.5)
P 		1755.9
(-1)
P 		1598.9
(-2)
P 		973
B 1684.9
(-1.9)
P 		1572.5
(-3)
P 		2100.8
(2.3)
P 		2168.9
(3)
P 		2153.4
(2.8)
P 		1898.5
(0.3)
P 		596
C 1405.1
(-3)
P 		1508.2
(-2.4)
P 		2154.9
(1.6)
P 		2387.8
(3)
P 		1544.9
(-2.1)
P 		1994.8
(0.6)
P 		983
avr 1511.7
(-3) 		1506
(-3) 		2221.9
(2.4) 		2296.7
(3) 		1818.1
(-0.6) 		1830.7
(-0.5) 		791
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 424.6
(3)
P 		186
(-2.9)
P 		215.3
(-2.2)
P 		181.8
(-3)
P 		243
B 346.5
(3)
P 		297.1
(1)
P 		195.2
(-3)
P 		236.6
(-1.4)
P 		151
C 417.2
(3)
P 		361.9
(1.4)
P 		369.1
(1.6)
P 		209.5
(-3)
P 		208
avr 396.1
(3) 		281.7
(-0.7) 		259.9
(-1.4) 		209.3
(-3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 609
1 2 3 4 5 6 range
A 266.4
(-3)
P 		511.2
(1.5)
P 		524.8
(1.8)
P 		591.8
(3)
P 		529.9
(1.9)
P 		389.3
(-0.7)
P 		325
B 586.3
(-1.7)
P 		523.4
(-2.8)
P 		510.1
(-3)
P 		574.5
(-1.9)
P 		874.9
(3)
P 		707.9
(0.3)
P 		365
C 520.8
(-1.2)
P 		460.2
(-3)
P 		548.5
(-0.4)
P 		480.2
(-2.4)
P 		499.9
(-1.9)
P 		667.8
(3)
P 		208
avr 457.8
(-3) 		498.3
(-1.6) 		527.8
(-0.6) 		548.8
(0.1) 		634.9
(3) 		588.3
(1.4) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1770
Sequence Type Exemplar sequence
Representative Public ID F52F12.7 NCBI
Target Description F52F12.7 /REP_DB=WormBase Gene ID /WP=CE10852 /TR=SW:O17883 /GB=CAB05736.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=steroidogenic acute regulatory protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060223 NCBI Caenorhabditis elegans F52F12.7 (F52F12.7) mRNA, complete cds. 11/11 None
GENEFINDER00000038792 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9936079:9938911:1 11/11 None
SNAP00000038784 ENSEMBL cdna:SNAP chromosome:CEL140:I:9937850:9938911:1 11/11 None
F52F12.7 ENSEMBL cdna:known chromosome:CEL140:I:9937850:9938954:1 gene:F52F12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9937780-9938842(+) 100.0 100.0
Public Domain and Genome References
Gene Title steroidogenic acute regulatory protein like
Ensembl F52F12.7
Entrez Gene 172846 Entrez gene
SwissProt O17883 EMBL-EBI
WormBase CE10852 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6694 steroid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15485 cholesterol binding inferred from electronic annotation QuickGO AmiGO
17127 cholesterol transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05736 Hypothetical protein F52F12.7 [Caenorhabditis elegans] ref|NP_492624.1| F52F12.7 [Caenorhabditis elegans] sp|O17883|YX7O_CAEEL Hypothetical protein F52F12.7 in chromosome I 1.0E-138
blast CAE60259 Hypothetical protein CBG03834 [Caenorhabditis briggsae] 1.0E-110
blast CAE60259 Hypothetical protein CBG03834 [Caenorhabditis briggsae] 1.0E-109
blast CAE17820 Hypothetical protein F52F12.9 [Caenorhabditis elegans] ref|NP_001021486.1| F52F12.9 [Caenorhabditis elegans] 3.0E-92
blast JC4315 steroidogenic acute regulatory protein - bovine sp|Q28918|STAR_BOVIN Steroidogenic acute regulatory protein, mitochondrial precursor (StAR) (StARD1) 3.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR002913 EMBL-EBI Lipid-binding START 9.3E-58
Pfam IPR002913 EMBL-EBI Lipid-binding START 9.3E-58
Sequence
Target Sequence 
>C. ELEGANS:193629_AT
gatactccacacggacgaatggtcacaatttcaacagaactaccaatgcctgttgaagat
gtaatgaaagagacttggaatggaatggaagctcttcccgagtggaatcagaatattaat
tttgctgccagaatcgccgcaccaacttcaaatttcgatattgttacgtacgggaacaat
gatgtcttagtggtcagtggacgtgaatttgtgtcagcgagaatttggagaaaagttgga
gatggattcattctggcttcccgaagtgtcacagttccatcattcaaatctaaacataag
ggaaaagttcgcgctcatcttcacttggcaggagcccgtttccgtccaaatcctgagaat
cccgaaaccactttaaccgacgttgtgatgcttgctgatttgaaaggatacctcccaaaa
atgattgttaatcaggtcatcggacgtattatgatcatggatacggtcacgaatcgtcgt
catttccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTCCACACGGACGAATGGTCA 265 423 220 Antisense
GGAAGCTCTTCCCGAGTGGAATCAG 478 531 306 Antisense
CGCCGCACCAACTTCAAATTTCGAT 230 257 354 Antisense
GGAGATGGATTCATTCTGGCTTCCC 670 517 457 Antisense
GTCACAGTTCCATCATTCAAATCTA 494 465 487 Antisense
AAGGGAAAAGTTCGCGCTCATCTTC 265 159 517 Antisense
TCATCTTCACTTGGCAGGAGCCCGT 380 621 534 Antisense
GTTTCCGTCCAAATCCTGAGAATCC 578 449 557 Antisense
TCCTGAGAATCCCGAAACCACTTTA 653 587 570 Antisense
CGACGTTGTGATGCTTGCTGATTTG 642 251 597 Antisense
GGTCACGAATCGTCGTCATTTCCAG 410 503 684 Antisense
Sequence Source Affymetrix Proprietary Database