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[193624_s_at]

Description R06A4.4A /REP_DB=WormBase Gene ID /WP=CE18111 /TR=O62332 /GB=CAB05586.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Armadillo-beta-catenin-like repeats (2 domains)
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 03      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 61      6grp_total > 34      4grp_total > 44      6grp_highest_sub > Cu      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 554.9
(-1.1)
P 		766.3
(3)
P 		453.4
(-3)
P 		545.4
(-1.2)
P 		313
B 672
(3)
P 		500.7
(-0.8)
P 		460.8
(-1.7)
P 		402.2
(-3)
P 		270
C 509.9
(-1)
P 		630.5
(3)
P 		559.2
(0.6)
P 		449.5
(-3)
P 		181
avr 578.9
(1.1) 		632.5
(3) 		491.1
(-2.1) 		465.7
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 498.5
(0)
P 		604.8
(3)
P 		432.5
(-1.9)
P 		392.2
(-3)
P 		395.2
(-2.9)
P 		532.2
(1)
P 		213
B 495
(1.6)
P 		476.5
(1)
P 		535.5
(3)
P 		379.9
(-2.4)
P 		361.9
(-3)
P 		496.9
(1.7)
P 		174
C 619.6
(3)
P 		431.8
(-0.6)
P 		547.1
(1.6)
P 		310.6
(-3)
P 		528.4
(1.2)
P 		309.2
(-3)
P 		310
avr 537.7
(3) 		504.4
(1.9) 		505
(1.9) 		360.9
(-3) 		428.5
(-0.7) 		446.1
(-0.1) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 202
(3)
P 		166.3
(1.2)
P 		118.5
(-1.1)
P 		79.8
(-3)
P 		122
B 214.3
(3)
P 		123.7
(-1.2)
P 		106.8
(-2)
P 		85.7
(-3)
P 		129
C 168.8
(1.7)
P 		181.3
(2.3)
P 		194.9
(3)
P 		75.8
(-3)
P 		119
avr 195
(3) 		157.1
(1) 		140.1
(0.1) 		80.4
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 91.9
(-3)
P 		215.1
(3)
P 		94.2
(-2.9)
P 		99.5
(-2.6)
P 		119.3
(-1.7)
P 		129.6
(-1.2)
P 		123
B 172.2
(2.1)
P 		158.6
(1.1)
P 		130
(-0.9)
P 		100.6
(-3)
P 		147
(0.3)
P 		185.3
(3)
P 		85
C 229.7
(3)
P 		131.8
(-0.5)
P 		139.2
(-0.2)
P 		62.5
(-3)
P 		171
(0.9)
P 		103.5
(-1.5)
P 		167
avr 164.6
(2.7) 		168.5
(3) 		121.1
(-0.5) 		87.5
(-3) 		145.8
(1.3) 		139.5
(0.9) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193624_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3108
Sequence Type Exemplar sequence
Representative Public ID R06A4.4A NCBI
Target Description R06A4.4A /REP_DB=WormBase Gene ID /WP=CE18111 /TR=O62332 /GB=CAB05586.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Armadillo-beta-catenin-like repeats (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064587(11), NM_064586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064587 NCBI Caenorhabditis elegans IMportin Beta family member (imb-2) (imb-2) mRNA, complete cds. 11/11 None
NM_064586 NCBI Caenorhabditis elegans IMportin Beta family member (imb-2) (imb-2) mRNA, complete cds. 11/11 None
GENEFINDER00000043992 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14365629:14369119:1 10/11 None
R06A4.4b ENSEMBL cdna:known chromosome:CEL140:II:14365625:14373261:1 gene:R06A4.4 11/11 None
R06A4.4a ENSEMBL cdna:known chromosome:CEL140:II:14365629:14373261:1 gene:R06A4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043979 7/11 Cross Hyb Matching Probes None
SNAP00000043980 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043989 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14365625-14373258(+) 98.34 100.0
Public Domain and Genome References
Ensembl R06A4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05587 Hypothetical protein R06A4.4b [Caenorhabditis elegans] ref|NP_496988.1| IMportin Beta family member (imb-2) [Caenorhabditis elegans] 0.0
blast CAB05586 Hypothetical protein R06A4.4a [Caenorhabditis elegans] ref|NP_496987.1| IMportin Beta family member (imb-2) [Caenorhabditis elegans] 0.0
blast CAE65921 Hypothetical protein CBG11089 [Caenorhabditis briggsae] 0.0
blast AAI03375 Unknown (protein for MGC:127455) [Bos taurus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001494 EMBL-EBI Importin-beta, N-terminal 6.0E-19
Sequence
Target Sequence 
>C. ELEGANS:193624_S_AT
tcagacaatcgtgcttcgcgttactcggagatttgacgaaagcgtgtccagaacgagtgc
tcccacagagtagcaatttcatattttttctcgcccaaaacctggatccctccaagatca
gtgtgtgcaacaatgcgatttgggcgctcggagagttggcgctgaaaatgggtcccgcaa
tgaaacagttcatcgggcccatcattgaacctctgattgttgtcatcaatagccagcaga
atatgcagcggacgttgttggagaatactgccatcacaatcggccgtctcggacaatgtt
gcggtgaagagctggctccccatatcagccgattcgttcgcccttgctgctactcacttc
gaaatattaaggataacgcggaaaaagagagcgcgttcatcggtttatgcaatatgatca
acatgaatcccgtcggagttctcaatgatttcatcttttggtgtgacgctatcgcttcgt
ggacagtaccgaccgactcacttcgggttctttttgccgggattcttcaatcattcaaac
aacaagtcggcgatttcaactggaacaacttcattctacaacttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGACAATCGTGCTTCGCGTTACT 203 625 2036 Antisense
AAACCTGGATCCCTCCAAGATCAGT 63 125 2133 Antisense
GGCCCATCATTGAACCTCTGATTGT 699 541 2231 Antisense
AATACTGCCATCACAATCGGCCGTC 400 171 2299 Antisense
AATCGGCCGTCTCGGACAATGTTGC 251 169 2313 Antisense
ATGTTGCGGTGAAGAGCTGGCTCCC 394 47 2331 Antisense
AGAGAGCGCGTTCATCGGTTTATGC 105 69 2421 Antisense
GAATCCCGTCGGAGTTCTCAATGAT 629 325 2460 Antisense
ATCTTTTGGTGTGACGCTATCGCTT 16 31 2488 Antisense
TATCGCTTCGTGGACAGTACCGACC 682 657 2505 Antisense
GAACAACTTCATTCTACAACTTCCA 343 353 2598 Antisense
Sequence Source Affymetrix Proprietary Database