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[193618_at] GATA family of transcription factors

Description F58E10.2 /REP_DB=WormBase Gene ID /WP=CE18784 /GEN=end-1 /TR=O44353 /GB=CAB04513.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=GATA family of transcription factors
Cluster 6grp_total > 33      4grp_total > 50      6grp_cgc > 70      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 167.1
(-0.1)
A 		177.3
(0.6)
A 		214.5
(3)
A 		122.1
(-3)
M 		92
B 156.1
(0.2)
A 		222
(3)
A 		210.2
(2.5)
P 		83.1
(-3)
A 		139
C 139.6
(-3)
A 		241.5
(3)
A 		168.3
(-1.3)
M 		168.6
(-1.3)
A 		102
avr 154.3
(-1) 		213.6
(3) 		197.7
(1.9) 		124.6
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 162.7
(3)
A 		136.8
(-2.4)
A 		152.1
(0.8)
A 		133.7
(-3)
A 		145.2
(-0.6)
A 		149.6
(0.3)
A 		29
B 162.4
(3)
A 		146.4
(1.3)
A 		115.3
(-1.9)
P 		104.7
(-3)
A 		132.1
(-0.2)
A 		113.2
(-2.1)
A 		58
C 148.3
(-1.5)
A 		165.2
(0)
A 		199.3
(3)
A 		182.2
(1.5)
A 		153.5
(-1)
A 		130.9
(-3)
P 		68
avr 157.8
(3) 		149.5
(1.1) 		155.6
(2.5) 		140.2
(-1) 		143.6
(-0.2) 		131.2
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 60.8
(3)
A 		38.5
(-0.1)
A 		56.1
(2.3)
A 		17.9
(-3)
M 		43
B 49.8
(2.2)
A 		54.8
(3)
A 		48.7
(2)
P 		17.7
(-3)
A 		37
C 46.2
(-0.4)
A 		69.4
(3)
A 		58.7
(1.4)
M 		28.4
(-3)
A 		41
avr 52.3
(2.6) 		54.2
(2.9) 		54.5
(3) 		21.3
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 30
(-3)
A 		48.6
(3)
A 		33.1
(-2)
A 		33.9
(-1.7)
A 		43.8
(1.5)
A 		36.4
(-0.9)
A 		19
B 56.5
(3)
A 		48.7
(1.4)
A 		28
(-2.9)
P 		27.7
(-3)
A 		53.7
(2.4)
A 		42.2
(0)
A 		29
C 55
(3)
A 		50.4
(1.5)
A 		50.7
(1.6)
A 		36.6
(-3)
A 		49.7
(1.3)
A 		43.8
(-0.7)
P 		18
avr 47.2
(2.3) 		49.2
(3) 		37.3
(-1.3) 		32.7
(-3) 		49.1
(3) 		40.8
(-0.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14242
Sequence Type Exemplar sequence
Representative Public ID F58E10.2 NCBI
Target Description F58E10.2 /REP_DB=WormBase Gene ID /WP=CE18784 /GEN=end-1 /TR=O44353 /GB=CAB04513.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=GATA family of transcription factors
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074074 NCBI Caenorhabditis elegans ENDoderm determining family member (end-1) (end-1) mRNA, complete cds. 11/11 None
SNAP00000001483 ENSEMBL cdna:SNAP chromosome:CEL140:V:13987725:13989588:1 11/11 None
GENEFINDER00000001497 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13987725:13989588:1 11/11 None
F58E10.2 ENSEMBL cdna:known chromosome:CEL140:V:13987725:13989588:1 gene:F58E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13987724-13989588(+) 100.0 100.0
Public Domain and Genome References
Gene Title GATA family of transcription factors
Gene Symbol end-1
Ensembl F58E10.2
Entrez Gene 179893 Entrez gene
SwissProt O44353 EMBL-EBI
WormBase CE18784 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7493 endodermal cell fate determination inferred from direct assay QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
16563 transcriptional activator activity inferred from direct assay QuickGO AmiGO
3677 DNA binding inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04513 Hypothetical protein F58E10.2 [Caenorhabditis elegans] ref|NP_506475.1| ENDoderm determining family member (end-1) [Caenorhabditis elegans] gb|AAB97516.1| GATA transcription factor END-1 [Caenorhabditis elegans] 1.0E-103
blast CAE66175 Hypothetical protein CBG11413 [Caenorhabditis briggsae] 3.0E-45
blast CAE63063 Hypothetical protein CBG07341 [Caenorhabditis briggsae] 8.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 2.9E-14
Sequence
Target Sequence 
>C. ELEGANS:193618_AT
taatcatggaaatccttcgccactcgatgctacacaaatgtaccaacaggctccagttca
atatggtggtggagatcaatattttgatgattttgggcaatactttgttcaatcgtacga
tccagcacaacaatcgacaccagtgcatccaatgtttggaagtctcgatatgatgaattg
ctactcacaacagtatccccaaattggacaagactatcaacaacaggaaatcgaaaatat
tccaccagtctctacaaatcgcaaaattgtgaacaaaaagccctcaacgttccacacgaa
ctctgtctgctccaatccaaattgtagaactcgtgagacaactctatggagaagaactga
ttcaggagctattgagtgcaacggttgctccctgtacttccgaaaaaatgggattcaaag
accagccgagttgtgccgtaaaacaataatgaaaagaaaccgacgcccacgtgccgaagt
acaatctccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCATGGAAATCCTTCGCCACTC 169 635 117 Antisense
CGCCACTCGATGCTACACAAATGTA 660 257 134 Antisense
ATGTACCAACAGGCTCCAGTTCAAT 442 47 154 Antisense
AATCGACACCAGTGCATCCAATGTT 683 167 248 Antisense
TTGCTACTCACAACAGTATCCCCAA 79 701 294 Antisense
TTCCACCAGTCTCTACAAATCGCAA 210 701 356 Antisense
TCAACGTTCCACACGAACTCTGTCT 362 631 400 Antisense
TGAGTGCAACGGTTGCTCCCTGTAC 508 565 489 Antisense
TCAAAGACCAGCCGAGTTGTGCCGT 367 629 531 Antisense
ATGAAAAGAAACCGACGCCCACGTG 504 41 565 Antisense
CACGTGCCGAAGTACAATCTCCAAC 465 199 584 Antisense
Sequence Source Affymetrix Proprietary Database