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[193617_at] Zinc finger, C4 type (two domains)

Description T18D3.2 /REP_DB=WormBase Gene ID /WP=CE03663 /GEN=odr-7 /TR=SW:P41933 /GB=CAA92192.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 08      4grp_total > 22      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 46
(2.8)
A 		11.1
(-2.4)
A 		7.3
(-3)
A 		47.6
(3)
A 		40
B 42
(1.3)
A 		31.9
(-0)
A 		9
(-3)
A 		55.5
(3)
A 		47
C 64.6
(3)
A 		32.2
(-1.1)
A 		17.2
(-3)
A 		44.4
(0.4)
A 		47
avr 50.9
(3) 		25.1
(-0.9) 		11.2
(-3) 		49.2
(2.7) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 66.1
(3)
A 		3.6
(-2.9)
A 		37.8
(0.4)
A 		8.6
(-2.4)
A 		2
(-3)
A 		8.2
(-2.4)
A 		64
B 22.8
(3)
A 		18.7
(1.8)
A 		9.9
(-0.8)
A 		7.3
(-1.6)
A 		2.4
(-3)
A 		10.6
(-0.6)
A 		20
C 27.5
(3)
A 		5.7
(-3)
A 		10.5
(-1.7)
A 		21.4
(1.3)
A 		6.4
(-2.8)
A 		8.3
(-2.3)
A 		22
avr 38.8
(3) 		9.3
(-2) 		19.4
(-0.3) 		12.4
(-1.5) 		3.6
(-3) 		9
(-2.1) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16.8
(3)
A 		2.4
(-2.8)
A 		1.9
(-3)
A 		7
(-0.9)
A 		15
B 13.4
(3)
A 		7.9
(0.1)
A 		2.1
(-3)
A 		11.8
(2.2)
A 		11
C 21.4
(3)
A 		9.3
(-1.7)
A 		6
(-3)
A 		7.5
(-2.4)
A 		15
avr 17.2
(3) 		6.5
(-1.6) 		3.3
(-3) 		8.8
(-0.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 12.2
(3)
A 		1.3
(-2.6)
A 		8.2
(0.9)
A 		2.2
(-2.2)
A 		0.6
(-3)
A 		2
(-2.3)
A 		12
B 7.9
(3)
A 		6.2
(1.5)
A 		2.4
(-1.8)
A 		1.9
(-2.2)
A 		1
(-3)
A 		4
(-0.4)
A 		7
C 10.2
(3)
A 		1.7
(-3)
A 		2.7
(-2.3)
A 		4.3
(-1.2)
A 		2.1
(-2.7)
A 		2.8
(-2.2)
A 		9
avr 10.1
(3) 		3.1
(-1.7) 		4.4
(-0.8) 		2.8
(-1.9) 		1.2
(-3) 		2.9
(-1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16500
Sequence Type Exemplar sequence
Representative Public ID T18D3.2 NCBI
Target Description T18D3.2 /REP_DB=WormBase Gene ID /WP=CE03663 /GEN=odr-7 /TR=SW:P41933 /GB=CAA92192.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077688 NCBI Caenorhabditis elegans ODoRant response abnormal family member (odr-7) (odr-7) mRNA, complete cds. 11/11 None
SNAP00000005387 ENSEMBL cdna:SNAP chromosome:CEL140:X:12458990:12461560:-1 11/11 None
GENEFINDER00000005394 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12458990:12461560:-1 11/11 None
T18D3.2 ENSEMBL cdna:known chromosome:CEL140:X:12458990:12461560:-1 gene:T18D3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12458989-12461560(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol odr-7
Ensembl T18D3.2
Entrez Gene 181403 Entrez gene
SwissProt P41933 EMBL-EBI
WormBase CE03663 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92192 Hypothetical protein T18D3.2 [Caenorhabditis elegans] ref|NP_510089.1| ODoRant response abnormal family member (odr-7) [Caenorhabditis elegans] sp|P41933|ODR7_CAEEL Nuclear hormone receptor family member odr-7 (Odorant response abnormal protein 7) gb|AAC46497.1| odr-7 0.0
blast CAE57245 Hypothetical protein CBG00123 [Caenorhabditis briggsae] 1.0E-99
blast NP_504427 T09D3.4 [Caenorhabditis elegans] gb|AAG24198.2| Hypothetical protein T09D3.4 [Caenorhabditis elegans] 1.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.1E-17
Sequence
Target Sequence 
>C. ELEGANS:193617_AT
cgcaacaatttacatttccacctccattattagcggagaaatcatttgagcagcccagaa
tgcgagaagacgttttaccttttcatccacaattctatccggcaccacttgacatgggca
caaacttcaagcaagaaatgagaactccaccaatcgacgggcacattgattacagaaaat
ttgatgctagcggaaagagaatggagtttcagccaccgggtgctttgcatgactgtcaag
tgtgtttgtcaactcatgctaacgggcttcactttggagcccgtacatgcgccgcatgtg
ctgcgtttttcagaagaactatcagcgatgacaaacgatatgtctgtaagaggaaccaac
ggtgcaataatgcaagccgcgatggaactgggtatcggaagatttgtcggagttgtcgaa
tgaaacgatgtctggaaattggaatgcttccagaaaatgtgcagcacaagcgaaatcgtc
gagattctggatccccgcctcgtaaaactccatttgacactttcttcaacggattttacc
cctcattccaaccttctggatcagcagctcaaccgatcactgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCAACAATTTACATTTCCACCTCC 192 253 767 Antisense
TTTCATCCACAATTCTATCCGGCAC 126 673 847 Antisense
CGGCACCACTTGACATGGGCACAAA 489 241 866 Antisense
TCAGCCACCGGGTGCTTTGCATGAC 626 623 975 Antisense
GTCAACTCATGCTAACGGGCTTCAC 203 465 1014 Antisense
TACATGCGCCGCATGTGCTGCGTTT 27 645 1050 Antisense
GCAAGCCGCGATGGAACTGGGTATC 346 313 1138 Antisense
AAATCGTCGAGATTCTGGATCCCCG 615 117 1239 Antisense
AAAACTCCATTTGACACTTTCTTCA 294 129 1270 Antisense
CCTCATTCCAACCTTCTGGATCAGC 478 267 1307 Antisense
ATCAGCAGCTCAACCGATCACTGTA 534 25 1326 Antisense
Sequence Source Affymetrix Proprietary Database