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[193616_at] GATA family of transcription factors

Description F58E10.5 /REP_DB=WormBase Gene ID /WP=CE18787 /GEN=end-3 /TR=Q9XUW7 /GB=CAB04516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=GATA family of transcription factors
Cluster 6grp_total > 89      4grp_total > 20      6grp_cgc > 79      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 16.9
(-1.5)
A 		6.9
(-3)
A 		18.5
(-1.2)
A 		46.3
(3)
A 		39
B 36.8
(-0)
A 		61.1
(3)
A 		12.5
(-3)
A 		61.2
(3)
A 		49
C 49.9
(-0.3)
A 		34.2
(-1.8)
A 		22.2
(-3)
A 		83.3
(3)
A 		61
avr 34.5
(-0.8) 		34.1
(-0.9) 		17.7
(-3) 		63.6
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 38.8
(-0.2)
A 		19.5
(-2.1)
A 		9.9
(-3)
A 		10.5
(-2.9)
A 		71.2
(3)
A 		26.9
(-1.3)
A 		61
B 10.9
(-2.4)
A 		22.1
(0.5)
A 		19.4
(-0.2)
A 		8.7
(-3)
A 		15.8
(-1.1)
A 		31.5
(3)
A 		23
C 18.8
(-2.4)
A 		18.2
(-2.5)
A 		16.7
(-2.7)
A 		22.5
(-1.8)
A 		14.7
(-3)
A 		52.9
(3)
A 		38
avr 22.8
(-0.7) 		19.9
(-1.4) 		15.3
(-2.6) 		13.9
(-3) 		33.9
(2.2) 		37.1
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6.1
(2.2)
A 		1.5
(-3)
A 		4.8
(0.7)
A 		6.8
(3)
A 		5
B 11.8
(1.4)
A 		15.1
(3)
A 		2.9
(-3)
A 		13
(2)
A 		12
C 16.5
(3)
A 		9.8
(-1.6)
A 		7.7
(-3)
A 		14
(1.3)
A 		9
avr 11.5
(3) 		8.8
(0.5) 		5.1
(-3) 		11.3
(2.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.2
(-1.4)
A 		7
(-1.5)
A 		2.2
(-3)
A 		2.7
(-2.8)
A 		21.5
(3)
A 		6.5
(-1.7)
A 		19
B 3.8
(-2.1)
A 		7.4
(0.2)
A 		4.7
(-1.5)
A 		2.3
(-3)
A 		6.4
(-0.4)
A 		11.8
(3)
A 		10
C 7
(-1.8)
A 		5.5
(-2.5)
A 		4.3
(-3)
A 		4.5
(-2.9)
A 		4.8
(-2.8)
A 		17.7
(3)
A 		13
avr 6
(-1.1) 		6.6
(-0.7) 		3.7
(-2.7) 		3.2
(-3) 		10.9
(2.3) 		12
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12752
Sequence Type Exemplar sequence
Representative Public ID F58E10.5 NCBI
Target Description F58E10.5 /REP_DB=WormBase Gene ID /WP=CE18787 /GEN=end-3 /TR=Q9XUW7 /GB=CAB04516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=GATA family of transcription factors
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074079 NCBI Caenorhabditis elegans ENDoderm determining family member (end-3) (end-3) mRNA, complete cds. 11/11 None
SNAP00000001491 ENSEMBL cdna:SNAP chromosome:CEL140:V:14017289:14018438:1 9/11 None
GENEFINDER00000001499 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14017289:14018438:1 11/11 None
F58E10.5 ENSEMBL cdna:known chromosome:CEL140:V:14017289:14018438:1 gene:F58E10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14017288-14018438(+) 100.0 100.0
Public Domain and Genome References
Gene Title GATA family of transcription factors
Gene Symbol end-3
Ensembl F58E10.5
Entrez Gene 191631 Entrez gene
SwissProt Q9XUW7 EMBL-EBI
WormBase CE18787 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04516 Hypothetical protein F58E10.5 [Caenorhabditis elegans] ref|NP_506480.1| ENDoderm determining family member (end-3) [Caenorhabditis elegans] 1.0E-133
blast CAB04516 Hypothetical protein F58E10.5 [Caenorhabditis elegans] ref|NP_506480.1| ENDoderm determining family member (end-3) [Caenorhabditis elegans] 1.0E-108
blast CAE66168 Hypothetical protein CBG11406 [Caenorhabditis briggsae] 6.0E-30
blast CAE66166 Hypothetical protein CBG11404 [Caenorhabditis briggsae] 4.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 1.5E-14
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 1.5E-14
Sequence
Target Sequence 
>C. ELEGANS:193616_AT
gaagaaggctacgggacaccatctccagatgtcctccagaatatgaattatcatcattat
ccggcacaagatatgacgacaaattcatacaatggaggctatgacaattcaatgcaacag
aattttatgcaaccagataatggtgcaggatactacaatgaaaactatcaacagatgcct
gattttcaatttccagttcaaaattttgattttacaaatcaatttgaattcacgacgcct
attaatgacctccagcaatctcaaacttccatcaaccacaccaatcccgacaacaatgaa
aattccatgccagagataccaattgacgggggcttcaacttttttccagctcaagaagtt
caagaatggaagccagctagaaaagcttcgaaaaataaaatcaagaagatttccacaatg
catatcaactcttcgtgctccaattgtggatgtcgggaaacgaaattgtggaggagaaat
gagcaaggagaaactgagtgcaatccgtgtaatctttacgaacgagtcaaaggacataaa
agaccacaacatctttggaataagccagctgccaagagaagacgccgtccagttgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAGGCTACGGGACACCATCTC 504 337 112 Antisense
ACGGGACACCATCTCCAGATGTCCT 100 95 122 Antisense
GATGCCTGATTTTCAATTTCCAGTT 358 415 285 Antisense
TCACGACGCCTATTAATGACCTCCA 288 623 341 Antisense
CACACCAATCCCGACAACAATGAAA 476 195 388 Antisense
GAAAATTCCATGCCAGAGATACCAA 36 353 409 Antisense
GAGATACCAATTGACGGGGGCTTCA 705 387 424 Antisense
CTTCAACTTTTTTCCAGCTCAAGAA 691 221 444 Antisense
AATGCATATCAACTCTTCGTGCTCC 271 165 528 Antisense
GCCAGCTGCCAAGAGAAGACGCCGT 658 277 675 Antisense
AGAGAAGACGCCGTCCAGTTGCTCC 676 67 686 Antisense
Sequence Source Affymetrix Proprietary Database