[Home] | [Total List]

[193606_at] synaptosomal associated protein 25A (SNAP-25A)

Description T14G12.2 /REP_DB=WormBase Gene ID /WP=CE04963 /TR=Q22507 /GB=AAA82433.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=synaptosomal associated protein 25A (SNAP-25A)
Cluster 6grp_total > 32      4grp_total > 38      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 111.2
(3)
A 		84.1
(-0.5)
A 		64.9
(-3)
A 		70.8
(-2.2)
A 		46
B 98
(3)
A 		85.9
(1.6)
A 		62.6
(-1.2)
A 		46.9
(-3)
A 		51
C 138.2
(2.5)
A 		87.9
(-1.3)
A 		66.1
(-3)
A 		144.6
(3)
A 		79
avr 115.8
(3) 		86
(-0.5) 		64.5
(-3) 		87.4
(-0.3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 83.2
(1.2)
A 		82
(1.1)
A 		111
(3)
A 		82.7
(1.2)
A 		67.7
(0.2)
A 		17.5
(-3)
A 		94
B 135.9
(3)
A 		83.4
(0.3)
A 		77.4
(0)
A 		54.8
(-1.2)
A 		76.2
(-0.1)
A 		18.8
(-3)
A 		117
C 95.5
(0.9)
A 		95
(0.9)
A 		117.8
(2.5)
A 		125.2
(3)
A 		63.9
(-1.3)
A 		39.7
(-3)
A 		86
avr 104.9
(3) 		86.8
(1.6) 		102.1
(2.8) 		87.6
(1.7) 		69.3
(0.3) 		25.3
(-3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 40.5
(3)
A 		18.3
(-1.4)
A 		17
(-1.7)
A 		10.4
(-3)
A 		30
B 31.3
(3)
A 		21.2
(0.2)
A 		14.5
(-1.7)
A 		10
(-3)
A 		21
C 45.7
(3)
A 		25.3
(-2.4)
A 		23
(-3)
A 		24.4
(-2.6)
A 		23
avr 39.2
(3) 		21.6
(-1.3) 		18.2
(-2.2) 		14.9
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 15.3
(-0.3)
A 		29.2
(3)
A 		24.2
(1.8)
A 		21
(1)
A 		20.4
(0.9)
A 		4.3
(-3)
A 		25
B 47.3
(3)
A 		27.8
(0.1)
A 		18.8
(-1.2)
A 		14.5
(-1.9)
A 		31
(0.6)
A 		7
(-3)
A 		40
C 35.4
(3)
A 		29
(1.3)
A 		30
(1.5)
A 		25.2
(0.2)
A 		20.7
(-1)
A 		13.3
(-3)
A 		22
avr 32.7
(3) 		28.7
(2) 		24.3
(0.9) 		20.2
(-0.1) 		24
(0.9) 		8.2
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18288
Sequence Type Exemplar sequence
Representative Public ID T14G12.2 NCBI
Target Description T14G12.2 /REP_DB=WormBase Gene ID /WP=CE04963 /TR=Q22507 /GB=AAA82433.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=synaptosomal associated protein 25A (SNAP-25A)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076240(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076240 NCBI Caenorhabditis elegans T14G12.2 (T14G12.2) mRNA, complete cds. 9/11 None
GENEFINDER00000013404 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3729377:3731805:1 10/11 None
T14G12.2 ENSEMBL cdna:known chromosome:CEL140:X:3729377:3731805:1 gene:T14G12.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013391 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3729377-3731806(+) 95.79 100.0
Public Domain and Genome References
Gene Title synaptosomal associated protein 25A (SNAP-25A)
Ensembl T14G12.2
Entrez Gene 188509 Entrez gene
SwissProt Q22507 EMBL-EBI
WormBase CE35769 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508641 T14G12.2 [Caenorhabditis elegans] gb|AAA82433.2| Hypothetical protein T14G12.2 [Caenorhabditis elegans] 1.0E-127
blast NP_508641 T14G12.2 [Caenorhabditis elegans] gb|AAA82433.2| Hypothetical protein T14G12.2 [Caenorhabditis elegans] 1.0E-119
blast CAE68477 Hypothetical protein CBG14277 [Caenorhabditis briggsae] 2.0E-68
blast CAE68477 Hypothetical protein CBG14277 [Caenorhabditis briggsae] 1.0E-57
blast BAC06591.1 SNAP-23 [Xenopus laevis] 6.0E-15
Sequence
Target Sequence 
>C. ELEGANS:193606_AT
gaatgtagatgcagtccagacaactgctgctcttgaagatcaagacgaacagcttgacaa
aatcgaggcgaatctcagcaatgtcatcgatgatctgaatgttgtttcacataacataac
agcaatggagcattattgcggatgcggcttctttcgaattctccgcgcgccattcaagta
ttttcgaaaacgagagcgtgacatcataaaggaagaagtattagaaaaaatgacgagccc
aaaattgcgacgtaaagaggaaagtaacatgatgatgttcacgaattccagcaagcgaag
ggagtctaccggggattttatgaaacgaacattcatacagccacgtcgtatgtcgcagaa
atgtagattacatctaacatgtgacgcaatagaagatgagttggaacgaaacttgatgca
gattgatcagggacttgaatctgtcaaaaatttggctgttgatatgcacgtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTAGATGCAGTCCAGACAACT 620 331 216 Antisense
GACAACTGCTGCTCTTGAAGATCAA 492 365 234 Antisense
GGCGAATCTCAGCAATGTCATCGAT 451 541 282 Antisense
TTATTGCGGATGCGGCTTCTTTCGA 307 677 348 Antisense
ATGCGGCTTCTTTCGAATTCTCCGC 555 41 357 Antisense
ATGACGAGCCCAAAATTGCGACGTA 33 45 445 Antisense
GATGTTCACGAATTCCAGCAAGCGA 26 411 489 Antisense
GCAAGCGAAGGGAGTCTACCGGGGA 523 317 506 Antisense
AACGAACATTCATACAGCCACGTCG 407 145 539 Antisense
CAGCCACGTCGTATGTCGCAGAAAT 667 201 553 Antisense
ATTTGGCTGTTGATATGCACGTACA 244 19 665 Antisense
Sequence Source Affymetrix Proprietary Database