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[193605_at] Methanococcus hypothetical protein 0682 like

Description F16A11.2 /REP_DB=WormBase Gene ID /WP=CE23663 /TR=SW:P90838 /GB=CAB04121.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Methanococcus hypothetical protein 0682 like
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 95      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 91      6grp_total > 75      4grp_total > 48      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 187.5
(0)
P 		160.5
(-3)
P 		214.1
(3)
P 		184.2
(-0.3)
P 		54
B 144.5
(-0.2)
P 		146.4
(0.1)
P 		169.5
(3)
P 		122.3
(-3)
P 		47
C 174.5
(-3)
P 		212.2
(1.7)
P 		222.9
(3)
P 		199.4
(0.1)
P 		48
avr 168.8
(-3) 		173
(-2.2) 		202.2
(3) 		168.6
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 110.8
(-3)
P 		145.1
(-1.8)
P 		225.4
(0.9)
P 		235.2
(1.3)
P 		228.9
(1)
P 		286
(3)
P 		175
B 167.9
(-3)
P 		166.7
(-3)
P 		275.8
(0.8)
P 		260.3
(0.3)
P 		275.9
(0.9)
P 		336.8
(3)
P 		170
C 121.9
(-3)
P 		193.5
(-1.1)
P 		208.4
(-0.8)
P 		261.6
(0.6)
P 		228.6
(-0.2)
P 		354.1
(3)
P 		232
avr 133.5
(-3) 		168.4
(-1.9) 		236.5
(0.2) 		252.4
(0.7) 		244.5
(0.5) 		325.6
(3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 68.3
(3)
P 		34.8
(-1.9)
P 		56
(1.2)
P 		27
(-3)
P 		41
B 46.1
(3)
P 		36.2
(0)
P 		39.3
(1)
P 		26.1
(-3)
P 		20
C 57.8
(0.3)
P 		61
(0.7)
P 		77.7
(3)
P 		33.6
(-3)
P 		44
avr 57.4
(2.9) 		44
(0.1) 		57.7
(3) 		28.9
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 20.4
(-3)
P 		51.6
(0.8)
P 		49.1
(0.5)
P 		59.6
(1.8)
P 		69.1
(2.9)
P 		69.6
(3)
P 		49
B 58.4
(-2.8)
P 		55.5
(-3)
P 		67
(-2)
P 		68.9
(-1.9)
P 		112.1
(1.8)
P 		125.6
(3)
P 		70
C 45.2
(-3)
P 		59.1
(-1.9)
P 		53
(-2.4)
P 		52.6
(-2.4)
P 		74
(-0.6)
P 		118.5
(3)
P 		73
avr 41.3
(-3) 		55.4
(-1.7) 		56.4
(-1.6) 		60.4
(-1.2) 		85.1
(1.2) 		104.6
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193605_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.445
Sequence Type Exemplar sequence
Representative Public ID F16A11.2 NCBI
Target Description F16A11.2 /REP_DB=WormBase Gene ID /WP=CE23663 /TR=SW:P90838 /GB=CAB04121.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Methanococcus hypothetical protein 0682 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060097 NCBI Caenorhabditis elegans F16A11.2 (F16A11.2) mRNA, complete cds. 11/11 None
SNAP00000004130 ENSEMBL cdna:SNAP chromosome:CEL140:I:9399078:9401218:-1 11/11 None
GENEFINDER00000004133 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9399078:9401218:-1 11/11 None
F16A11.2 ENSEMBL cdna:known chromosome:CEL140:I:9398981:9401218:-1 gene:F16A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9399008-9401149(-) 100.0 100.0
Public Domain and Genome References
Gene Title Methanococcus hypothetical protein 0682 like
Ensembl F16A11.2
Entrez Gene 184556 Entrez gene
SwissProt P90838 EMBL-EBI
WormBase CE23663 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603925_X_AT similar to CG9987-PA cfa
CANINE:1601810_AT similar to CG9987-PA cfa
CANINE:1595169_S_AT similar to CG9987-PA cfa
CANINE:1595168_AT similar to CG9987-PA cfa
CANINE:1588103_AT similar to CG9987-PA cfa
CANINE_2:CFA.12883.1.A1_S_AT similar to CG9987-PA cfa
CANINE_2:CFA.12883.1.A1_X_AT similar to CG9987-PA cfa
CANINE_2:CFA.19539.1.S1_S_AT similar to CG9987-PA cfa
CANINE_2:CFA.5209.1.A1_AT similar to CG9987-PA cfa
CANINE_2:CFAAFFX.3576.1.S1_AT similar to CG9987-PA cfa
DROSOPHILA_2:1639553_AT dm
DROSGENOME1:146493_AT dm
CHICKEN:GGAAFFX.7997.1.S1_AT similar to hypothetical protein HSPC117 gga
CHICKEN:GGAAFFX.8002.1.S1_AT similar to hypothetical protein HSPC117 gga
PLASMODIUM_ANOPHELES:200042_AT hypothetical protein HSPC117 hs
HG-U133B:200042_AT hypothetical protein HSPC117 hs
HG-U133_PLUS_2:200042_AT hypothetical protein HSPC117 hs
HG-U133A_2:200042_AT hypothetical protein HSPC117 hs
HG-U133A:200042_AT hypothetical protein HSPC117 hs
HG-FOCUS:200042_AT hypothetical protein HSPC117 hs
U133_X3P:200042_AT hypothetical protein HSPC117 hs
HU35KSUBA:RC_AA151882_AT hypothetical protein HSPC117 hs
HU35KSUBA:W26116_S_AT hypothetical protein HSPC117 hs
U133_X3P:G7657014_3P_AT hypothetical protein HSPC117 hs
HG-U95AV2:38689_AT hypothetical protein HSPC117 hs
HG-U133_PLUS_2:234283_AT Hypothetical protein HSPC117 hs
HG-U133B:234283_AT Hypothetical protein HSPC117 hs
HG-U133_PLUS_2:234548_AT Hypothetical protein HSPC117 hs
HG-U133B:234548_AT Hypothetical protein HSPC117 hs
HG-U133_PLUS_2:239980_AT Hypothetical protein HSPC117 hs
HG-U133B:239980_AT Hypothetical protein HSPC117 hs
U133_X3P:HS.273213.0.A1_3P_AT Hypothetical protein HSPC117 hs
MOUSE430A_2:1420129_S_AT DNA segment, Chr 10, Wayne State University 52, expressed mm
MOUSE430_2:1420129_S_AT DNA segment, Chr 10, Wayne State University 52, expressed mm
MOE430A:1420129_S_AT DNA segment, Chr 10, Wayne State University 52, expressed mm
MU11KSUBA:AA409545_RC_S_AT DNA segment, Chr 10, Wayne State University 52, expressed mm
MG-U74AV2:101960_AT DNA segment, Chr 10, Wayne State University 52, expressed mm
MG-U74AV2:161197_R_AT DNA segment, Chr 10, Wayne State University 52, expressed mm
MOE430A:1423880_AT DNA segment, Chr 10, Wayne State University 52, expressed mm
MOUSE430A_2:1423880_AT DNA segment, Chr 10, Wayne State University 52, expressed mm
MOUSE430_2:1423880_AT DNA segment, Chr 10, Wayne State University 52, expressed mm
MOUSE430_2:1420130_S_AT DNA segment, Chr 10, Wayne State University 52, expressed (D10Wsu52e), mRNA mm
MOE430A:1420130_S_AT DNA segment, Chr 10, Wayne State University 52, expressed (D10Wsu52e), mRNA mm
MOUSE430A_2:1420130_S_AT DNA segment, Chr 10, Wayne State University 52, expressed (D10Wsu52e), mRNA mm
MOE430B:1439097_AT DNA segment, Chr 10, Wayne State University 52, expressed (D10Wsu52e), mRNA mm
MOUSE430_2:1439097_AT DNA segment, Chr 10, Wayne State University 52, expressed (D10Wsu52e), mRNA mm
MU19KSUBB:TC33489_S_AT DNA segment, Chr 10, Wayne State University 52, expressed (D10Wsu52e), mRNA mm
MU19KSUBB:TC33490_S_AT DNA segment, Chr 10, Wayne State University 52, expressed (D10Wsu52e), mRNA mm
RG-U34A:RC_AI639411_G_AT P55 rn
RG-U34A:RC_AI639411_AT P55 rn
RAE230A:1371812_AT P55 rn
RAT230_2:1371812_AT P55 rn
RAE230A:1377349_AT P55 rn
RAT230_2:1377349_AT P55 rn
Protein Similarities
Method ID Description E-Value
blast CAB04121 Hypothetical protein F16A11.2 [Caenorhabditis elegans] ref|NP_492498.1| F16A11.2 [Caenorhabditis elegans] sp|P90838|YT6J_CAEEL Hypothetical UPF0027 protein F16A11.2 in chromosome I 0.0
blast CAE74450 Hypothetical protein CBG22190 [Caenorhabditis briggsae] 0.0
blast T21006 hypothetical protein F16A11.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001233 EMBL-EBI Protein of unknown function UPF0027 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193605_AT
gaatggcggctgctgcaaacttcgcctgggttaacagatcgtgtatcacattctgtgttc
gtaatgcattccaaaagacatttggaatgtcagcagatgatatggatatgcaagtaatct
atgacgtgtcacataatgtagcaaaaatggaagagcatatggttgatggtagaccacgtc
agctgtgtgttcatcgaaaaggagctacacgcgcttttccggctcatcatccattaatac
cagttgattatcagttaattggacaacctgtactaattggtggaagtatgggaacttgta
gttatgttctaacaggaactgaacaaggattagtggaaacttttggaacaacatgtcatg
gagctggacgagcactttcacgtgccaaatcacgccgaactatcacttgggattcggtaa
ttgatgatttgaaaaagaaggagatctcaattcgcattgcatcgcctaaattgattatgg
aagaagcacccgaatcgtataagaatgtgacggacgttgtagacacgtgtgatgcagctg
gcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGCGGCTGCTGCAAACTTCGC 546 331 938 Antisense
AACTTCGCCTGGGTTAACAGATCGT 272 139 955 Antisense
ATTCTGTGTTCGTAATGCATTCCAA 127 11 987 Antisense
GGTAGACCACGTCAGCTGTGTGTTC 469 505 1105 Antisense
TTTTCCGGCTCATCATCCATTAATA 695 675 1152 Antisense
GAGCTGGACGAGCACTTTCACGTGC 135 387 1298 Antisense
TTTCACGTGCCAAATCACGCCGAAC 461 671 1313 Antisense
CACGCCGAACTATCACTTGGGATTC 684 197 1328 Antisense
TCTCAATTCGCATTGCATCGCCTAA 364 613 1382 Antisense
ATGGAAGAAGCACCCGAATCGTATA 225 53 1414 Antisense
TAGACACGTGTGATGCAGCTGGCAT 21 653 1457 Antisense
Sequence Source Affymetrix Proprietary Database