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[193601_at] Alcohol/other dehydrogenases, short chain type

Description K10H10.6 /REP_DB=WormBase Gene ID /WP=CE20000 /TR=Q9XU55 /GB=CAB05784.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster 6grp_total > 55      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 41.6
(-3)
P 		57.5
(-0.6)
A 		70.7
(1.4)
A 		81
(3)
P 		39
B 58.6
(3)
P 		54.7
(1.7)
M 		40.4
(-3)
A 		52.3
(0.9)
P 		18
C 52.8
(-2.1)
P 		89.2
(3)
P 		46.1
(-3)
A 		50.1
(-2.4)
P 		43
avr 51
(-3) 		67.1
(3) 		52.4
(-2.5) 		61.1
(0.8) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 34.1
(-1.9)
A 		27.7
(-3)
A 		34.4
(-1.9)
P 		62.8
(3)
M 		29.7
(-2.7)
A 		48.7
(0.6)
P 		35
B 58.4
(3)
P 		41.5
(0.1)
M 		50.3
(1.6)
P 		23.4
(-3)
A 		38.9
(-0.3)
A 		40.1
(-0.1)
P 		35
C 44.9
(-2.3)
P 		59.8
(1)
P 		68.9
(3)
A 		41.6
(-3)
A 		42.7
(-2.8)
A 		57.6
(0.5)
P 		27
avr 45.8
(0.7) 		43
(-0.5) 		51.2
(3) 		42.6
(-0.7) 		37.1
(-3) 		48.8
(2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 15.1
(-0.1)
P 		12.5
(-2.5)
A 		18.5
(3)
A 		11.9
(-3)
P 		7
B 18.7
(3)
P 		13.5
(-0.4)
M 		9.4
(-3)
A 		11.1
(-1.9)
P 		9
C 17.5
(0.2)
P 		25.6
(3)
P 		16.1
(-0.3)
A 		8.4
(-3)
P 		17
avr 17.1
(2.9) 		17.2
(3) 		14.7
(0.8) 		10.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.3
(-3)
A 		9.9
(-0.8)
A 		7.5
(-2.3)
P 		15.9
(3)
M 		9
(-1.3)
A 		11.9
(0.5)
P 		10
B 20.3
(3)
P 		13.8
(0.2)
M 		12.2
(-0.4)
P 		6.2
(-3)
A 		15.8
(1.1)
A 		14.9
(0.7)
P 		14
C 16.6
(1.5)
P 		18.3
(2.4)
P 		17.5
(2)
A 		8.4
(-3)
A 		13.8
(-0)
A 		19.3
(3)
P 		11
avr 14.4
(1.8) 		14
(1.4) 		12.4
(-0.5) 		10.2
(-3) 		12.9
(0.1) 		15.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3038
Sequence Type Exemplar sequence
Representative Public ID K10H10.6 NCBI
Target Description K10H10.6 /REP_DB=WormBase Gene ID /WP=CE20000 /TR=Q9XU55 /GB=CAB05784.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064611 NCBI Caenorhabditis elegans K10H10.6 (K10H10.6) mRNA, complete cds. 11/11 None
GENEFINDER00000031902 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14503098:14504810:1 11/11 None
K10H10.6 ENSEMBL cdna:known chromosome:CEL140:II:14503188:14504810:1 gene:K10H10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031898 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14503184-14504807(+) 100.0 100.0
Public Domain and Genome References
Gene Title Alcohol/other dehydrogenases, short chain type
Ensembl K10H10.6
Entrez Gene 187285 Entrez gene
SwissProt Q9XU55 EMBL-EBI
WormBase CE20000 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05784 Hypothetical protein K10H10.6 [Caenorhabditis elegans] ref|NP_497012.1| K10H10.6 [Caenorhabditis elegans] 1.0E-178
blast CAB05779 Hypothetical protein K10H10.3a [Caenorhabditis elegans] ref|NP_001022250.1| DeHydrogenases, Short chain family member (dhs-8) [Caenorhabditis elegans] 1.0E-144
blast CAB05779 Hypothetical protein K10H10.3a [Caenorhabditis elegans] ref|NP_001022250.1| DeHydrogenases, Short chain family member (dhs-8) [Caenorhabditis elegans] 1.0E-143
blast CAE65936 Hypothetical protein CBG11109 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.3E-10
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.3E-10
Sequence
Target Sequence 
>C. ELEGANS:193601_AT
gagtctttcaacctgctgttgctaagacaaaagatggccttgaatcacatttcggtgtta
atgtccttgctcattttacagtaatggttcgactctccgcgccgtccagaattgtaatac
tttcttcaactctcagttccagacatggtttcaaaaaatctatgggaataactgagaagt
tgaaaattcttcaagaagagaaagcttctgcgtcatctcttcagctttatggagcttcga
aaatggcagatatgctgattgcattcaaattacacagagatgagtataaaaatgaaatta
gcacatatttcgtgcatcccggggatggagttagaaccgacattttcagagattctacac
tcggaaaggtgctaactgttctctcaacgccttgtataaaaaactgcagccagggggcag
cgacaacagtata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCTTTCAACCTGCTGTTGCTAA 632 399 356 Antisense
ATGTCCTTGCTCATTTTACAGTAAT 281 49 416 Antisense
TTACAGTAATGGTTCGACTCTCCGC 322 683 431 Antisense
CCGCGCCGTCCAGAATTGTAATACT 130 261 452 Antisense
CTTTCTTCAACTCTCAGTTCCAGAC 246 223 475 Antisense
GAAGAGAAAGCTTCTGCGTCATCTC 331 339 550 Antisense
GCGTCATCTCTTCAGCTTTATGGAG 687 291 565 Antisense
TAGCACATATTTCGTGCATCCCGGG 395 651 654 Antisense
GAAAGGTGCTAACTGTTCTCTCAAC 411 361 719 Antisense
CTGTTCTCTCAACGCCTTGTATAAA 280 239 731 Antisense
GCCAGGGGGCAGCGACAACAGTATA 317 281 764 Antisense
Sequence Source Affymetrix Proprietary Database