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[193600_s_at]

Description H12C20.2A /REP_DB=WormBase Gene ID /WP=CE19915 /GEN=pms-2 /TR=Q9TVL8 /GB=CAA18355.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DNA mismatch repair protein (PMS2)
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 83      6grp_total > 97      4grp_total > 54      6grp_highest_sub > In      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 494.2
(3)
P 		285
(-1.9)
P 		285.5
(-1.9)
P 		238.3
(-3)
P 		256
B 402.6
(3)
P 		270
(-0.8)
P 		303.4
(0.2)
P 		190.5
(-3)
P 		212
C 408.8
(3)
P 		316.4
(0.8)
P 		310.4
(0.7)
P 		154.9
(-3)
P 		254
avr 435.2
(3) 		290.5
(-0.6) 		299.8
(-0.4) 		194.6
(-3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 365.4
(-3)
P 		379.4
(-2.7)
P 		372.2
(-2.8)
P 		429.8
(-1.6)
P 		616.3
(2.6)
P 		633.2
(3)
P 		268
B 341.3
(-2)
P 		284.9
(-3)
P 		419.5
(-0.7)
P 		373.6
(-1.5)
P 		561.9
(1.7)
P 		636.9
(3)
P 		352
C 401.9
(-0.9)
P 		283.5
(-3)
P 		506.8
(1)
P 		435.7
(-0.3)
P 		465.6
(0.3)
P 		616.8
(3)
P 		333
avr 369.5
(-2) 		315.9
(-3) 		432.8
(-0.8) 		413
(-1.1) 		547.9
(1.4) 		629
(3) 		313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 179.9
(3)
P 		61.9
(-1.9)
P 		74.6
(-1.4)
P 		34.9
(-3)
P 		145
B 128.4
(3)
P 		66.7
(-1.2)
P 		70.3
(-1)
P 		40.6
(-3)
P 		88
C 135.3
(3)
P 		91
(0.6)
P 		108.2
(1.5)
P 		26.1
(-3)
P 		109
avr 147.9
(3) 		73.2
(-0.9) 		84.4
(-0.3) 		33.9
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 67.4
(-3)
P 		134.9
(0.4)
P 		81.1
(-2.3)
P 		109
(-0.9)
P 		186
(3)
P 		154.2
(1.4)
P 		119
B 118.8
(-2)
P 		94.8
(-3)
P 		101.9
(-2.7)
P 		98.9
(-2.8)
P 		228.3
(2.6)
P 		237.5
(3)
P 		143
C 149
(0.1)
P 		86.5
(-3)
P 		129
(-0.9)
P 		87.6
(-2.9)
P 		150.7
(0.2)
P 		206.5
(3)
P 		120
avr 111.7
(-2.2) 		105.4
(-2.6) 		104
(-2.7) 		98.5
(-3) 		188.3
(2.3) 		199.4
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193600_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12834
Sequence Type Exemplar sequence
Representative Public ID H12C20.2A NCBI
Target Description H12C20.2A /REP_DB=WormBase Gene ID /WP=CE19915 /GEN=pms-2 /TR=Q9TVL8 /GB=CAA18355.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DNA mismatch repair protein (PMS2)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073532 NCBI Caenorhabditis elegans PMS (Post Meiotic Segregation) family member (pms-2) (pms-2) mRNA, complete cds. 11/11 None
H12C20.2a ENSEMBL cdna:known chromosome:CEL140:V:11569397:11572566:-1 gene:H12C20.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002548 8/11 Cross Hyb Matching Probes None
GENEFINDER00000002553 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179587 2 1 NM_073532 193600_s_at (11)
NM_073533 172572_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11569477-11572434(-) 100.0 100.0
Public Domain and Genome References
Ensembl H12C20.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98478 Hypothetical protein H12C20.2a [Caenorhabditis elegans] emb|CAA18355.1| Hypothetical protein H12C20.2a [Caenorhabditis elegans] ref|NP_505933.1| PMS (Post Meiotic Segregation) family member (pms-2) [Caenorhabditis elegans] 0.0
blast CAE75340 Hypothetical protein CBG23320 [Caenorhabditis briggsae] 0.0
blast EAA04111 ENSANGP00000007566 [Anopheles gambiae str. PEST] ref|XP_308635.2| ENSANGP00000007566 [Anopheles gambiae str. PEST] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR002099 EMBL-EBI DNA mismatch repair protein 6.8E-34
Pfam IPR003594 EMBL-EBI ATP-binding region, ATPase-like 6.8E-8
Sequence
Target Sequence 
>C. ELEGANS:193600_S_AT
ggtcaattcaaccacggattcatcatttgccgcctacgtggtcatctattcatcgttgat
cagcatgccagcgacgaaaaatataattttgaacgtcttcagagcagtgctaaactcact
aaacagccacttttcatgccaactgcgcttggttttggagctgtacaagagttgatcatt
cgtgagaatttgcccattttccacgcaaatggtttcgatttcgaattcagcgaaaatgat
ggatgcattaaaacatttttgactgcaaggcccgagcttctaaatcaacaactcacgaat
agtgatctcgaagaaattctggcagtggtatcacaatatcctaatcagatgtaccgtcca
gttcgtattcgtaaaatttttgcgtccaaagcatgcagaaaatccgtaatgattggaaaa
ccattgaatcaacgtgaaatgacacaaattattcgtcatctggcgaagctagatcaacca
tggaactgtccgcatggaagacccacaattcgtcacttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCAATTCAACCACGGATTCATCA 402 503 1879 Antisense
CGCCTACGTGGTCATCTATTCATCG 174 257 1909 Antisense
GTTGATCAGCATGCCAGCGACGAAA 609 435 1933 Antisense
TTGAACGTCTTCAGAGCAGTGCTAA 351 705 1967 Antisense
AAACTCACTAAACAGCCACTTTTCA 107 127 1990 Antisense
GCCAACTGCGCTTGGTTTTGGAGCT 454 277 2016 Antisense
TGAGAATTTGCCCATTTTCCACGCA 181 569 2061 Antisense
TGCAAGGCCCGAGCTTCTAAATCAA 324 407 2142 Antisense
TGTACCGTCCAGTTCGTATTCGTAA 303 553 2228 Antisense
TGGAACTGTCCGCATGGAAGACCCA 433 545 2359 Antisense
GAAGACCCACAATTCGTCACTTGGC 547 339 2375 Antisense
Sequence Source Affymetrix Proprietary Database