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[193599_at] Arabidopsis pathogenesis-related protein 5 like

Description F28D1.4 /REP_DB=WormBase Gene ID /WP=CE05744 /TR=Q19875 /GB=CAA94599.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Arabidopsis pathogenesis-related protein 5 like
Cluster 6grp_total > 97      4grp_total > 40      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 5.3
(-3)
A 		59.1
(1.3)
M 		81
(3)
A 		54.7
(0.9)
P 		76
B 9.2
(-3)
A 		40.7
(0.2)
A 		68.1
(3)
A 		27.1
(-1.2)
A 		59
C 10.1
(-3)
A 		43.6
(2.3)
A 		47.9
(3)
A 		48.2
(3)
A 		38
avr 8.2
(-3) 		47.8
(1.1) 		65.7
(3) 		43.3
(0.7) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 46.3
(-0.5)
A 		34.8
(-1.2)
A 		14.2
(-2.4)
A 		3.9
(-3)
A 		66.6
(0.7)
A 		105.2
(3)
P 		101
B 5.7
(-3)
A 		19.1
(-1.9)
A 		48.2
(0.6)
A 		53.9
(1.1)
A 		75.9
(3)
A 		55.8
(1.3)
P 		70
C 35.4
(-1.3)
A 		3.5
(-3)
A 		38.2
(-1.2)
A 		70.4
(0.6)
A 		77.9
(1)
A 		116.5
(3)
P 		113
avr 29.1
(-2.2) 		19.1
(-3) 		33.5
(-1.8) 		42.7
(-1.1) 		73.5
(1.4) 		92.5
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.9
(-3)
A 		12.8
(0.4)
M 		21.2
(3)
A 		8
(-1.1)
P 		19
B 2.9
(-3)
A 		10
(0.3)
A 		15.8
(3)
A 		5.8
(-1.7)
A 		13
C 3.3
(-3)
A 		12.5
(1.1)
A 		16.7
(3)
A 		8.1
(-0.9)
A 		13
avr 2.7
(-3) 		11.8
(0.6) 		17.9
(3) 		7.3
(-1.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 8.5
(-1.2)
A 		12.4
(-0.2)
A 		3.1
(-2.5)
A 		1
(-3)
A 		20.1
(1.7)
A 		25.6
(3)
P 		25
B 2
(-3)
A 		6.3
(-2.1)
A 		11.7
(-1)
A 		14.3
(-0.4)
A 		30.8
(3)
A 		20.8
(0.9)
P 		29
C 13.1
(-1.1)
A 		1.1
(-3)
A 		9.7
(-1.6)
A 		14.2
(-0.9)
A 		25.2
(0.8)
A 		39
(3)
P 		38
avr 7.9
(-2.6) 		6.6
(-3) 		8.2
(-2.6) 		9.8
(-2.1) 		25.4
(2.2) 		28.5
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10267
Sequence Type Exemplar sequence
Representative Public ID F28D1.4 NCBI
Target Description F28D1.4 /REP_DB=WormBase Gene ID /WP=CE05744 /TR=Q19875 /GB=CAA94599.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Arabidopsis pathogenesis-related protein 5 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069960(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069960 NCBI Caenorhabditis elegans THaumatiN family member (thn-3) (thn-3) mRNA, complete cds. 11/11 None
SNAP00000029694 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12381561:12382308:1 10/11 None
GENEFINDER00000029709 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12380073:12382308:1 11/11 None
F28D1.4 ENSEMBL cdna:known chromosome:CEL140:IV:12381561:12382308:1 gene:F28D1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12381566-12382314(+) 100.0 100.0
Public Domain and Genome References
Gene Title Arabidopsis pathogenesis-related protein 5 like
Gene Symbol thn-3
Ensembl F28D1.4
Entrez Gene 185061 Entrez gene
SwissProt Q19875 EMBL-EBI
WormBase CE05744 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259925_AT pathogenesis-related protein 5 (PR-5) at
ATGENOME1:14636_S_AT pathogenesis-related protein 5 (PR-5) at
Protein Similarities
Method ID Description E-Value
blast CAA94599 Hypothetical protein F28D1.4 [Caenorhabditis elegans] ref|NP_502361.1| THaumatiN family member (thn-3) [Caenorhabditis elegans] 1.0E-141
blast CAA94599 Hypothetical protein F28D1.4 [Caenorhabditis elegans] ref|NP_502361.1| THaumatiN family member (thn-3) [Caenorhabditis elegans] 1.0E-140
blast CAA94599 Hypothetical protein F28D1.4 [Caenorhabditis elegans] ref|NP_502361.1| THaumatiN family member (thn-3) [Caenorhabditis elegans] 1.0E-138
blast CAA94598 Hypothetical protein F28D1.3 [Caenorhabditis elegans] ref|NP_502360.1| THaumatiN family member (thn-1) [Caenorhabditis elegans] 1.0E-120
blast CAE59849 Hypothetical protein CBG03322 [Caenorhabditis briggsae] 1.0E-116
blast CAA94598 Hypothetical protein F28D1.3 [Caenorhabditis elegans] ref|NP_502360.1| THaumatiN family member (thn-1) [Caenorhabditis elegans] 1.0E-107
blast CAA94600 Hypothetical protein F28D1.5 [Caenorhabditis elegans] ref|NP_502362.1| THaumatiN family member (thn-2) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 2.3E-103
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 5.7E-103
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 4.9E-106
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 2.3E-103
Sequence
Target Sequence 
>C. ELEGANS:193599_AT
gcaaattcaccatctggcctggaattcttggccccggaaatccagctgaaggaggtttca
agcttaatgctggagaacctagagatattgatgttgatgatggatggactgccggaagaa
tttgggcaagaactggatgtaatgaaaactttgactgtgataccggatcatgcggagtaa
aactcagagcatgtaacggagccggaggggttccaccagcatctcttgctgaattcacat
tgaatggtgatggtggaaaggatttctacgatgtatcccttgttgatggatacaacctcc
cagttctgattgacccaaatgatggatctggatgcgatcgtgctggtggatgtgtcaagg
atatgaacgctgaatgtccagctgatcttgccgttcagggaagcaatggaaacactgtcg
cctgcaaatttggatgcgttgggtacaatactgatgaagaatgttgtcgtggggtacgca
atactccagaaacctgtgatcgttctacgaccgctcagaagttcaaagatgcttgcccaa
ctgcttactcctacgcctatgacgataaatcttcaaccttcacttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAATTCACCATCTGGCCTGGAAT 696 315 95 Antisense
GACTGTGATACCGGATCATGCGGAG 66 375 247 Antisense
ATTTCTACGATGTATCCCTTGTTGA 192 17 356 Antisense
CTGGATGCGATCGTGCTGGTGGATG 624 239 422 Antisense
CTGAATGTCCAGCTGATCTTGCCGT 176 237 464 Antisense
GGGAAGCAATGGAAACACTGTCGCC 396 493 492 Antisense
GTCGTGGGGTACGCAATACTCCAGA 707 463 560 Antisense
AAACCTGTGATCGTTCTACGACCGC 675 125 584 Antisense
GTTCTACGACCGCTCAGAAGTTCAA 348 443 596 Antisense
TTACTCCTACGCCTATGACGATAAA 197 683 639 Antisense
GATAAATCTTCAACCTTCACTTGCC 137 423 658 Antisense
Sequence Source Affymetrix Proprietary Database