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[193598_at] Alcohol/other dehydrogenases, short chain type

Description C01G12.5 /REP_DB=WormBase Gene ID /WP=CE15574 /TR=O45236 /GB=CAB03815.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster 6grp_high1_10_10 > 31      6grp_total > 21      4grp_total > 33      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 13.8
(-3)
A 		17.8
(-2.2)
A 		34.8
(1.5)
A 		42.1
(3)
P 		28
B 5.6
(-3)
A 		40.4
(3)
A 		28.1
(0.9)
A 		19.4
(-0.6)
A 		35
C 3.7
(-3)
A 		16.1
(3)
A 		9.4
(-0.2)
A 		8.1
(-0.9)
A 		12
avr 7.7
(-3) 		24.8
(3) 		24.1
(2.8) 		23.2
(2.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 89.3
(-0.2)
P 		95.1
(0.3)
P 		130.8
(3)
P 		63
(-2.2)
P 		82.1
(-0.7)
P 		52.2
(-3)
P 		79
B 75.4
(-0.7)
P 		108.8
(3)
P 		104.8
(2.6)
P 		70.6
(-1.2)
M 		54.7
(-3)
P 		71.2
(-1.2)
P 		54
C 71.1
(1.2)
P 		72.1
(1.5)
P 		58.2
(-3)
P 		76.8
(3)
P 		59.2
(-2.7)
P 		64.2
(-1.1)
P 		19
avr 78.6
(-0.3) 		92
(2) 		97.9
(3) 		70.1
(-1.7) 		65.3
(-2.5) 		62.5
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5
(-1.7)
A 		3.9
(-3)
A 		9.1
(3)
A 		6.2
(-0.3)
P 		5
B 1.8
(-3)
A 		10
(3)
A 		6.5
(0.4)
A 		4.1
(-1.3)
A 		8
C 1.2
(-3)
A 		4.6
(3)
A 		3.3
(0.7)
A 		1.4
(-2.6)
A 		3
avr 2.7
(-3) 		6.2
(2.8) 		6.3
(3) 		3.9
(-1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 16.5
(-1.9)
P 		33.8
(3)
P 		28.5
(1.5)
P 		16
(-2.1)
P 		24.8
(0.4)
P 		12.7
(-3)
P 		21
B 26.2
(-0.4)
P 		36.2
(3)
P 		25.5
(-0.7)
P 		18.7
(-3)
M 		22.2
(-1.8)
P 		26.6
(-0.3)
P 		18
C 26.3
(3)
P 		22
(0.8)
P 		14.8
(-3)
P 		15.4
(-2.7)
P 		19.1
(-0.8)
P 		21.5
(0.5)
P 		12
avr 23
(-0.3) 		30.7
(3) 		22.9
(-0.3) 		16.7
(-3) 		22
(-0.7) 		20.3
(-1.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3080
Sequence Type Exemplar sequence
Representative Public ID C01G12.5 NCBI
Target Description C01G12.5 /REP_DB=WormBase Gene ID /WP=CE15574 /TR=O45236 /GB=CAB03815.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064630 NCBI Caenorhabditis elegans C01G12.5 (C01G12.5) mRNA, complete cds. 11/11 None
SNAP00000024269 ENSEMBL cdna:SNAP chromosome:CEL140:II:14586418:14587398:-1 11/11 None
GENEFINDER00000024284 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14586418:14587398:-1 11/11 None
C01G12.5 ENSEMBL cdna:known chromosome:CEL140:II:14586418:14587398:-1 gene:C01G12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14586414-14587395(-) 100.0 100.0
Public Domain and Genome References
Gene Title Alcohol/other dehydrogenases, short chain type
Ensembl C01G12.5
Entrez Gene 182087 Entrez gene
SwissProt O45236 EMBL-EBI
WormBase CE15574 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.12647.1.S1_AT similar to 15-hydroxyprostaglandin dehydrogenase [NAD+] (PGDH) (Prostaglandin dehydrogenase 1) cfa
DROSOPHILA_2:1639269_A_AT Photoreceptor dehydrogenase dm
DROSGENOME1:153433_AT Photoreceptor dehydrogenase dm
CHICKEN:GGA.9639.1.S1_AT hydroxyprostaglandin dehydrogenase 15-(NAD) gga
HG-U95AV2:37322_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U95AV2:37323_R_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133_PLUS_2:211548_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-FOCUS:211548_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133A:211548_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133A_2:211548_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133_PLUS_2:211549_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133A:211549_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133A_2:211549_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133_PLUS_2:203914_X_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133A_2:203914_X_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133A:203914_X_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HUGENEFL:L76465_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
U133_X3P:G2047312_3P_A_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
U133_X3P:G1203981_3P_A_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
U133_X3P:HS.77348.0.S1_3P_A_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133A_2:203913_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133_PLUS_2:203913_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133A:203913_S_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U95AV2:32570_AT hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133_PLUS_2:242733_AT Hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U133B:242733_AT Hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U95C:51181_AT Hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U95E:70234_AT Hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U95D:76073_AT Hydroxyprostaglandin dehydrogenase 15-(NAD) hs
HG-U95D:78804_AT Hydroxyprostaglandin dehydrogenase 15-(NAD) hs
U133_X3P:HS.118493.0.A1_3P_AT Hydroxyprostaglandin dehydrogenase 15-(NAD) hs
MOUSE430A_2:1419905_S_AT hydroxyprostaglandin dehydrogenase 15 (NAD) mm
MOE430A:1419905_S_AT hydroxyprostaglandin dehydrogenase 15 (NAD) mm
MOUSE430_2:1419905_S_AT hydroxyprostaglandin dehydrogenase 15 (NAD) mm
MU11KSUBA:U44389_S_AT hydroxyprostaglandin dehydrogenase 15 (NAD) mm
MG-U74AV2:93351_AT hydroxyprostaglandin dehydrogenase 15 (NAD) mm
MOUSE430_2:1419906_AT Hydroxyprostaglandin dehydrogenase 15 (NAD), mRNA (cDNA clone MGC:14001 IMAGE:4208980) mm
MOUSE430A_2:1419906_AT Hydroxyprostaglandin dehydrogenase 15 (NAD), mRNA (cDNA clone MGC:14001 IMAGE:4208980) mm
MOE430A:1419906_AT Hydroxyprostaglandin dehydrogenase 15 (NAD), mRNA (cDNA clone MGC:14001 IMAGE:4208980) mm
MU19KSUBB:TC30625_AT Hydroxyprostaglandin dehydrogenase 15 (NAD), mRNA (cDNA clone MGC:14001 IMAGE:4208980) mm
RG-U34A:U44750_AT 15-hydroxyprostaglandin dehydrogenase rn
RG-U34B:RC_AA848820_AT 15-hydroxyprostaglandin dehydrogenase rn
RAE230A:1376191_AT 15-hydroxyprostaglandin dehydrogenase rn
RAT230_2:1376191_AT 15-hydroxyprostaglandin dehydrogenase rn
RAE230A:1387631_AT 15-hydroxyprostaglandin dehydrogenase rn
RAT230_2:1387631_AT 15-hydroxyprostaglandin dehydrogenase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03815 Hypothetical protein C01G12.5 [Caenorhabditis elegans] ref|NP_497031.1| C01G12.5 [Caenorhabditis elegans] 1.0E-152
blast NP_503752 DeHydrogenases, Short chain family member (dhs-14) [Caenorhabditis elegans] gb|AAF39953.1| Dehydrogenases, short chain protein 14 [Caenorhabditis elegans] 1.0E-112
blast NP_503753 R05D8.9 [Caenorhabditis elegans] gb|AAF39944.1| Hypothetical protein R05D8.9 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 7.6E-56
Sequence
Target Sequence 
>C. ELEGANS:193598_AT
gagctgatgaattcgactgttgacatttttggacgtcttgatattctggtgaacaatgct
ggcgcagcaataactgatttggaaggtcatatcggcgtgggtacaaacgtttccgttttt
gacaaaacaatgagaataaatttgagaagtgtggtgactttaactcaaaaagcaaaggag
catttgataaaaactaaaggagaaattgtgaatgtatccagtattgccggtgggcaacat
gcgcaacccgagctcatctattatgctatgtcaaaatcggctctggatcaatataccaga
agtgctgcaattgaccttattcaacacggagtgcgcgtcaactcggtgagccctggtgat
attcgtactggaatctacgaaactatgggaatgaataaggagtcggtggaaaacatctac
aaatttatggagtcccgaaaagaatgttgtccaattggaactattgctcaacctgtagat
gttgctaatattattgtatttttggcggatcgaaagctttcttcttacatcattgggcaa
tctattgtagctgatgggggctcatctttggtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTGATGAATTCGACTGTTGACA 208 387 235 Antisense
GGACGTCTTGATATTCTGGTGAACA 421 523 265 Antisense
GGAAGGTCATATCGGCGTGGGTACA 165 531 315 Antisense
TGTATCCAGTATTGCCGGTGGGCAA 64 561 447 Antisense
GCAACCCGAGCTCATCTATTATGCT 142 321 477 Antisense
ATGCTATGTCAAAATCGGCTCTGGA 48 43 497 Antisense
TGACCTTATTCAACACGGAGTGCGC 590 569 546 Antisense
GGTGAGCCCTGGTGATATTCGTACT 465 499 579 Antisense
GGAACTATTGCTCAACCTGTAGATG 413 529 691 Antisense
GCTTTCTTCTTACATCATTGGGCAA 166 305 750 Antisense
GCTGATGGGGGCTCATCTTTGGTGA 710 293 784 Antisense
Sequence Source Affymetrix Proprietary Database