[Home] | [Total List]

[193597_s_at] calcium alpha subunit; tetracycline resistance

Description F10D7.2 /REP_DB=WormBase Gene ID /WP=CE04352 /TR=Q19296 /GB=AAA81720.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=calcium alpha subunit; tetracycline resistance
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 63      6grp_total > 81      4grp_total > 58      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 416
1 2 3 4 range
A 513.1
(-0)
P 		636.9
(2)
P 		694
(3)
P 		334.8
(-3)
P 		359
B 510.6
(-1.2)
P 		750.8
(3)
P 		694.8
(2)
P 		410.6
(-3)
P 		340
C 476.3
(-0.9)
P 		609.5
(2)
P 		658.2
(3)
P 		377.6
(-3)
P 		281
avr 500
(-0.6) 		665.7
(2.7) 		682.3
(3) 		374.3
(-3) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 591.6
(-1.5)
P 		462.5
(-3)
P 		592.3
(-1.5)
P 		885.8
(2)
P 		974
(3)
P 		562.9
(-1.8)
P 		512
B 520.2
(-3)
P 		627.6
(-1.8)
P 		811.4
(0.4)
P 		1037.1
(3)
P 		938.4
(1.9)
P 		590
(-2.2)
P 		517
C 423.2
(-3)
P 		562.8
(-1.6)
P 		584.3
(-1.3)
P 		1007.4
(3)
P 		734.1
(0.2)
P 		553.9
(-1.7)
P 		584
avr 511.7
(-3) 		551
(-2.5) 		662.7
(-1.1) 		976.8
(3) 		882.2
(1.8) 		568.9
(-2.3) 		465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 186.8
(3)
P 		138.3
(0.9)
P 		181.4
(2.8)
P 		49
(-3)
P 		138
B 162.8
(1.6)
P 		185.4
(3)
P 		161
(1.5)
P 		87.5
(-3)
P 		98
C 157.7
(0.4)
P 		175.2
(1)
P 		229.4
(3)
P 		63.7
(-3)
P 		166
avr 169.1
(2) 		166.3
(1.8) 		190.6
(3) 		66.7
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 109.1
(-3)
P 		164.5
(-1.2)
P 		129
(-2.4)
P 		224.7
(0.8)
P 		293.9
(3)
P 		137
(-2.1)
P 		185
B 181
(-3)
P 		208.9
(-2.2)
P 		197
(-2.5)
P 		274.7
(-0.2)
P 		381.3
(3)
P 		220
(-1.8)
P 		200
C 156.8
(-2.5)
P 		171.7
(-1.4)
P 		148.7
(-3)
P 		202.6
(0.6)
P 		237.5
(3)
P 		185.4
(-0.5)
P 		89
avr 149
(-3) 		181.7
(-1.7) 		158.2
(-2.6) 		234
(0.3) 		304.2
(3) 		180.8
(-1.8) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193597_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17760
Sequence Type Exemplar sequence
Representative Public ID F10D7.2 NCBI
Target Description F10D7.2 /REP_DB=WormBase Gene ID /WP=CE04352 /TR=Q19296 /GB=AAA81720.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=calcium alpha subunit; tetracycline resistance
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078413(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078413 NCBI Caenorhabditis elegans F10D7.2 (F10D7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000025754 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17364811:17368550:-1 11/11 None
F10D7.2.1 ENSEMBL cdna:known chromosome:CEL140:X:17364638:17368553:-1 gene:F10D7.2 11/11 None
F10D7.2.2 ENSEMBL cdna:known chromosome:CEL140:X:17364638:17368555:-1 gene:F10D7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025746 8/11 Cross Hyb Matching Probes None
SNAP00000025747 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17364810-17368550(-) 100.0 100.0
Public Domain and Genome References
Gene Title calcium alpha subunit; tetracycline resistance
Ensembl F10D7.2
Entrez Gene 181765 Entrez gene
SwissProt Q19296 EMBL-EBI
WormBase CE04352 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18001.1.S1_AT similar to tetracycline transporter-like protein cfa
CANINE_2:CFA.3969.2.A1_AT similar to tetracycline transporter-like protein cfa
CANINE_2:CFAAFFX.22742.1.S1_AT similar to tetracycline transporter-like protein cfa
DROSOPHILA_2:1632404_AT tetracycline resistance dm
DROSGENOME1:154436_AT tetracycline resistance dm
CHICKEN:GGA.2575.1.S1_AT tetracycline transporter-like protein gga
HUGENEFL:L11669_AT tetracycline transporter-like protein hs
HG-U133A:209215_AT tetracycline transporter-like protein hs
HG-U133_PLUS_2:209215_AT tetracycline transporter-like protein hs
HG-FOCUS:209215_AT tetracycline transporter-like protein hs
HG-U133A_2:209215_AT tetracycline transporter-like protein hs
U133_X3P:G307501_3P_AT tetracycline transporter-like protein hs
HG-U95AV2:32080_AT tetracycline transporter-like protein hs
HG-U95D:74868_AT tetracycline transporter-like protein hs
MG-U74BV2:162866_AT RIKEN cDNA 0610009O03 gene mm
MG-U74CV2:167717_F_AT RIKEN cDNA 0610009O03 gene mm
MG-U74CV2:167722_F_AT RIKEN cDNA 0610009O03 gene mm
MOE430A:1416358_AT RIKEN cDNA 0610009O03 gene mm
MOUSE430A_2:1416358_AT RIKEN cDNA 0610009O03 gene mm
MOUSE430_2:1416358_AT RIKEN cDNA 0610009O03 gene mm
MU19KSUBC:TC39410_AT RIKEN cDNA 0610009O03 gene, mRNA (cDNA clone MGC:35628 IMAGE:5376230) mm
RG-U34A:RC_AA866425_AT similar to tetracycline transporter-like protein (predicted) rn
RAE230A:1382667_AT similar to tetracycline transporter-like protein (predicted) rn
RAT230_2:1382667_AT similar to tetracycline transporter-like protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA81720 Hypothetical protein F10D7.2 [Caenorhabditis elegans] ref|NP_510814.1| F10D7.2 [Caenorhabditis elegans] 0.0
blast CAE69683 Hypothetical protein CBG15936 [Caenorhabditis briggsae] 0.0
blast NP_001017667 hypothetical protein LOC550360 [Danio rerio] gb|AAH93169.1| Hypothetical protein LOC550360 [Danio rerio] 2.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510814.1 10 15-37,76-93,103-125,132-154,169-191,198-220,266-288,328-347,357-379,409-431
F10D7.2.1 10 15-37,76-93,103-125,132-154,169-191,198-220,266-288,328-347,357-379,409-431
F10D7.2.2 10 15-37,76-93,103-125,132-154,169-191,198-220,266-288,328-347,357-379,409-431
GENEFINDER00000025754 10 15-37,76-93,103-125,132-154,169-191,198-220,266-288,328-347,357-379,409-431
Sequence
Target Sequence 
>C. ELEGANS:193597_S_AT
gttccagttcacggcagtcaatgctccacaagaaagaaaacaagaaatgcaaaaagttgg
ctggatatattttctattccttttcttatattccggccttgaattcaccctaccattttt
gacacacatcagattcgactttgataacatgcaacaaggaaaagtctatctgtttactgg
gctcctgatgctccccatccaagcaaaatatgtgaggaagacccctatcgagaaacaaaa
ggctgtcgcagaattcgggattgcttgcatcatcccggcgtatttactggtggccgtcgc
caaaacgccattggttctttatgctggactattcttctatgcaattgcttcagctactgt
tgtcacaagtcttacatcgttagttcacgtcatctacccacaaagtgagaaaggggtgct
tgccggtattttcagaagtttaggatgtcttgcaagagctctgggacccgtgatttcatc
cacatttttctggctccttggagcaacgacctgctacattatgggtgcttttcttctatt
catcccactcattcttttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCAGTTCACGGCAGTCAATGCT 419 441 753 Antisense
TCTATTCCTTTTCTTATATTCCGGC 48 615 825 Antisense
GAATTCACCCTACCATTTTTGACAC 220 323 853 Antisense
AAGTCTATCTGTTTACTGGGCTCCT 447 157 914 Antisense
TCATCCCGGCGTATTTACTGGTGGC 7 609 1022 Antisense
GGTTCTTTATGCTGGACTATTCTTC 147 507 1065 Antisense
AATTGCTTCAGCTACTGTTGTCACA 260 179 1095 Antisense
ACATCGTTAGTTCACGTCATCTACC 313 105 1126 Antisense
AGAGCTCTGGGACCCGTGATTTCAT 652 69 1207 Antisense
CATTATGGGTGCTTTTCTTCTATTC 383 215 1269 Antisense
TATTCATCCCACTCATTCTTTTGAA 595 663 1289 Antisense
Sequence Source Affymetrix Proprietary Database