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[193592_s_at] tyrosine-protein kinase (KIN15/KIN16 subfamily)

Description T01G5.1 /REP_DB=WormBase Gene ID /WP=CE12974 /TR=O18008 /GB=CAB03265.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase (KIN15-KIN16 subfamily)
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 77      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 56      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 213.8
(-3)
P 		273.8
(-1.3)
P 		422.8
(3)
P 		224.9
(-2.7)
P 		209
B 200.2
(-3)
P 		340.4
(-0.1)
P 		489.2
(3)
P 		258
(-1.8)
P 		289
C 248.1
(-3)
P 		309.7
(-0.9)
P 		424.1
(3)
P 		274.7
(-2.1)
P 		176
avr 220.7
(-3) 		308
(-0.7) 		445.4
(3) 		252.5
(-2.2) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 193.3
(-2.6)
P 		237.1
(-2)
P 		258.4
(-1.7)
P 		165
(-3)
P 		181.4
(-2.8)
P 		581.4
(3)
P 		416
B 251.3
(-2.4)
P 		225.2
(-2.8)
P 		217
(-2.9)
P 		211.6
(-3)
P 		285.1
(-1.9)
P 		597.3
(3)
P 		386
C 200.5
(-2.9)
P 		190.8
(-3)
P 		217.9
(-2.7)
P 		237.2
(-2.4)
P 		247.1
(-2.3)
P 		662.8
(3)
P 		472
avr 215
(-2.8) 		217.7
(-2.8) 		231.1
(-2.6) 		204.6
(-3) 		237.9
(-2.5) 		613.8
(3) 		409
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 77.9
(0.5)
P 		59.4
(-1)
P 		110.5
(3)
P 		32.9
(-3)
P 		78
B 63.9
(-2.1)
P 		84.1
(-0)
P 		113.4
(3)
P 		55
(-3)
P 		58
C 82.1
(-0.9)
P 		89
(-0.5)
P 		147.8
(3)
P 		46.3
(-3)
P 		102
avr 74.6
(-0.7) 		77.5
(-0.5) 		123.9
(3) 		44.7
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 35.6
(-3)
P 		84.3
(-0.2)
P 		56.3
(-1.8)
P 		41.8
(-2.6)
P 		54.7
(-1.9)
P 		141.6
(3)
P 		106
B 87.4
(-1.8)
P 		75
(-2.2)
P 		52.7
(-3)
P 		56
(-2.9)
P 		115.8
(-0.8)
P 		222.7
(3)
P 		170
C 74.3
(-2.1)
P 		58.2
(-2.6)
P 		55.5
(-2.7)
P 		47.7
(-3)
P 		80
(-1.9)
P 		221.9
(3)
P 		174
avr 65.8
(-2.3) 		72.5
(-2) 		54.8
(-2.7) 		48.5
(-3) 		83.5
(-1.6) 		195.4
(3) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193592_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14548
Sequence Type Exemplar sequence
Representative Public ID T01G5.1 NCBI
Target Description T01G5.1 /REP_DB=WormBase Gene ID /WP=CE12974 /TR=O18008 /GB=CAB03265.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase (KIN15-KIN16 subfamily)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074327(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074327 NCBI Caenorhabditis elegans T01G5.1 (T01G5.1) mRNA, complete cds. 11/11 None
SNAP00000029271 ENSEMBL cdna:SNAP chromosome:CEL140:V:15119927:15120844:-1 9/11 None
GENEFINDER00000029277 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15117575:15122186:-1 11/11 None
T01G5.1 ENSEMBL cdna:known chromosome:CEL140:V:15119494:15121247:-1 gene:T01G5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15119493-15121247(-) 99.05 100.0
Public Domain and Genome References
Gene Title tyrosine-protein kinase (KIN15/KIN16 subfamily)
Ensembl T01G5.1
Entrez Gene 180021 Entrez gene
SwissProt O18008 EMBL-EBI
WormBase CE12974 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03265 Hypothetical protein T01G5.1 [Caenorhabditis elegans] ref|NP_506728.1| T01G5.1 [Caenorhabditis elegans] 0.0
blast CAB03265 Hypothetical protein T01G5.1 [Caenorhabditis elegans] ref|NP_506728.1| T01G5.1 [Caenorhabditis elegans] 1.0E-129
blast CAD24482 Hypothetical protein M176.6b [Caenorhabditis elegans] ref|NP_741034.1| protein KINase family member (kin-15) [Caenorhabditis elegans] 9.0E-50
blast CAB01648 Hypothetical protein M176.6a [Caenorhabditis elegans] ref|NP_741035.1| protein KINase family member (kin-15) [Caenorhabditis elegans] pir||C88264 protein kin-15 [imported] - Caenorhabditis elegans 9.0E-50
blast CAD24482 Hypothetical protein M176.6b [Caenorhabditis elegans] ref|NP_741034.1| protein KINase family member (kin-15) [Caenorhabditis elegans] 3.0E-48
blast CAB01648 Hypothetical protein M176.6a [Caenorhabditis elegans] ref|NP_741035.1| protein KINase family member (kin-15) [Caenorhabditis elegans] pir||C88264 protein kin-15 [imported] - Caenorhabditis elegans 3.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.8E-14
Pfam IPR000719 EMBL-EBI Protein kinase 2.0E-8
Pfam IPR000719 EMBL-EBI Protein kinase 1.8E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029277 1 37-59
Sequence
Target Sequence 
>C. ELEGANS:193592_S_AT
gcactgtgcacattggatcttctttcatatggatatcaaattgccattgcaatgaagttc
ttggctgattcaaggtgccttcatcgtgctctggcattgagaagtatatttgtgacacga
aataaaacaattcgcatcggagaatttggactcgcacggataaatgctagaaaagaatat
tacataatgaaatccccacagcttccacttgccccggaggtcatggcaccggaaagttct
gaggataaaaaattcacggagaaatctgaagtgcggtcgtttgcagtatgccttaccgga
atattccaattaggagtcccaccgcacgaagctgtaaacgctgtttattgtggtcaggat
attgaaagaaaacttccggaattacagtactgccatccagatatgtattcattcttgtca
tcttgttggaactttgaccctgaagcccgtcccacctactctaagtgtgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTGTGCACATTGGATCTTCTTT 488 315 463 Antisense
GGCTGATTCAAGGTGCCTTCATCGT 358 539 525 Antisense
CCTTCATCGTGCTCTGGCATTGAGA 651 269 540 Antisense
GAGAATTTGGACTCGCACGGATAAA 558 389 602 Antisense
GAAGTGCGGTCGTTTGCAGTATGCC 338 333 730 Antisense
GCAGTATGCCTTACCGGAATATTCC 138 313 745 Antisense
TATTCCAATTAGGAGTCCCACCGCA 47 663 764 Antisense
TCCCACCGCACGAAGCTGTAAACGC 261 587 779 Antisense
GGAATTACAGTACTGCCATCCAGAT 111 533 840 Antisense
TGTTGGAACTTTGACCCTGAAGCCC 547 555 886 Antisense
GTCCCACCTACTCTAAGTGTGTCGA 530 473 911 Antisense
Sequence Source Affymetrix Proprietary Database