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[193588_s_at] Arabidopsis pathogenesis-related protein 5 like /// Arabidopsis pathogenesis-related protein 5 like

Description F28D1.5 /REP_DB=WormBase Gene ID /WP=CE05745 /TR=Q19876 /GB=CAA94600.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Arabidopsis pathogenesis-related protein 5 like
Cluster 6grp_total > 99      4grp_total > 57      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 154
(-2)
A 		320.1
(0.7)
A 		460
(3)
P 		92.8
(-3)
A 		367
B 178.6
(-2)
A 		319.5
(1.9)
A 		361.4
(3)
P 		141
(-3)
A 		220
C 148.8
(-1.9)
A 		250.8
(0.4)
A 		368.2
(3)
P 		97.9
(-3)
A 		270
avr 160.5
(-2) 		296.8
(0.9) 		396.5
(3) 		110.6
(-3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3039
1 2 3 4 5 6 range
A 199.2
(-3)
A 		381.6
(-2.6)
P 		406.1
(-2.6)
P 		779.7
(-1.8)
P 		2811.8
(2.5)
P 		3044.5
(3)
P 		2845
B 215.1
(-3)
A 		381.8
(-2.6)
P 		465.7
(-2.4)
P 		726
(-1.8)
P 		2867.8
(3)
P 		2768.1
(2.8)
P 		2653
C 210.4
(-3)
A 		396
(-2.6)
P 		412.5
(-2.6)
P 		659
(-2.1)
P 		3238.4
(3)
P 		2514.4
(1.6)
P 		3028
avr 208.2
(-3) 		386.5
(-2.6) 		428.1
(-2.5) 		721.6
(-1.9) 		2972.7
(3) 		2775.7
(2.6) 		2765
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 56.1
(-0.6)
A 		69.5
(0.1)
A 		120.3
(3)
P 		13.6
(-3)
A 		107
B 56.9
(0)
A 		78.9
(2.5)
A 		83.7
(3)
P 		30
(-3)
A 		54
C 49.3
(-1.2)
A 		72.1
(-0)
A 		128.3
(3)
P 		16.5
(-3)
A 		112
avr 54.1
(-0.7) 		73.5
(0.5) 		110.8
(3) 		20
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1129
1 2 3 4 5 6 range
A 36.7
(-3)
A 		135.7
(-2.3)
P 		88.4
(-2.6)
P 		197.7
(-1.8)
P 		848.5
(3)
P 		741.2
(2.2)
P 		812
B 74.8
(-3)
A 		127.1
(-2.7)
P 		113.1
(-2.8)
P 		192.3
(-2.4)
P 		1165.2
(3)
P 		1032.2
(2.3)
P 		1090
C 78
(-3)
A 		120.8
(-2.7)
P 		105
(-2.8)
P 		132.5
(-2.7)
P 		1047.9
(3)
P 		841.7
(1.7)
P 		970
avr 63.2
(-3) 		127.9
(-2.6) 		102.2
(-2.8) 		174.2
(-2.3) 		1020.5
(3) 		871.7
(2.1) 		957
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193588_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8450
Sequence Type Exemplar sequence
Representative Public ID F28D1.5 NCBI
Target Description F28D1.5 /REP_DB=WormBase Gene ID /WP=CE05745 /TR=Q19876 /GB=CAA94600.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Arabidopsis pathogenesis-related protein 5 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069961(11), NM_069959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069961 NCBI Caenorhabditis elegans THaumatiN family member (thn-2) (thn-2) mRNA, complete cds. 11/11 None
NM_069959 NCBI Caenorhabditis elegans THaumatiN family member (thn-1) (thn-1) mRNA, complete cds. 11/11 A 
SNAP00000029693 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12380073:12380826:1 11/11 None
SNAP00000029695 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12383141:12383889:1 11/11 None
GENEFINDER00000029709 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12380073:12382308:1 11/11 None
GENEFINDER00000029712 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12383141:12383889:1 11/11 None
F28D1.3 ENSEMBL cdna:known chromosome:CEL140:IV:12380073:12380826:1 gene:F28D1.3 11/11 A 
F28D1.5 ENSEMBL cdna:known chromosome:CEL140:IV:12383141:12383976:1 gene:F28D1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12383146-12383895(+) 100.0 100.0
chrIV:12380088-12380832(+) 92.45 92.45
Public Domain and Genome References
Gene Title Arabidopsis pathogenesis-related protein 5 like
Arabidopsis pathogenesis-related protein 5 like
Gene Symbol thn-1
thn-2
Ensembl F28D1.3
F28D1.5
Entrez Gene 178187 Entrez gene
185060 Entrez gene
SwissProt Q19874 EMBL-EBI
Q19876 EMBL-EBI
WormBase CE05743 Wormbase
CE05745 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261248_AT pathogenesis-related thaumatin family protein at
ATH1-121501:259986_AT thaumatin-like protein, putative / pathogenesis-related protein, putative at
Protein Similarities
Method ID Description E-Value
blast CAA94599 Hypothetical protein F28D1.4 [Caenorhabditis elegans] ref|NP_502361.1| THaumatiN family member (thn-3) [Caenorhabditis elegans] 1.0E-140
blast CAA94600 Hypothetical protein F28D1.5 [Caenorhabditis elegans] ref|NP_502362.1| THaumatiN family member (thn-2) [Caenorhabditis elegans] 1.0E-121
blast CAA94598 Hypothetical protein F28D1.3 [Caenorhabditis elegans] ref|NP_502360.1| THaumatiN family member (thn-1) [Caenorhabditis elegans] 1.0E-121
blast CAA94598 Hypothetical protein F28D1.3 [Caenorhabditis elegans] ref|NP_502360.1| THaumatiN family member (thn-1) [Caenorhabditis elegans] 1.0E-120
blast CAE59849 Hypothetical protein CBG03322 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 1.3E-107
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 2.7E-107
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 4.9E-106
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 2.3E-103
Sequence
Target Sequence 
>C. ELEGANS:193588_S_AT
tacaacaagtgcccattcaccatctggccaggaattcttggccccggaaatccagctgga
ggaggcttccaacttacggctggacaatctagaaacattgatgtcgatgatgcatggact
gccggaagagtttgggcaagaactggatgtgatggaaacttcaactgtgagaccggattc
tgcagaaactcggagcaatgcaacggagctggaggagttccaccagcatcccttgctgaa
ttcacattgaaggcttggggaggacaagatttctatgatgtatcccttgtcgatggatac
aacctcccagttctgattgacccacatggcggatctggatgcaagcgtgcaggtggatgt
gtcaaggatatcaatgctgagtgcccagctgccctctctgtcaagggacacaacggaaac
actgtcgcctgcaaatctggatgcctcggatacaacacagatcaagaatgctgtcgtgga
gcctacggaactccagacaagtgccaccgctctgcaactgcccagatgttcaaggatgcc
tgtccaactgctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAACAAGTGCCCATTCACCATCT 234 643 85 Antisense
CCATTCACCATCTGGCCAGGAATTC 574 269 97 Antisense
GTCGATGATGCATGGACTGCCGGAA 384 473 187 Antisense
GAGACCGGATTCTGCAGAAACTCGG 116 391 253 Antisense
GCTGGAGGAGTTCCACCAGCATCCC 121 295 292 Antisense
ATTTCTATGATGTATCCCTTGTCGA 160 17 353 Antisense
GCAAGCGTGCAGGTGGATGTGTCAA 675 319 425 Antisense
CTGTCGCCTGCAAATCTGGATGCCT 46 241 506 Antisense
GGATGCCTCGGATACAACACAGATC 535 513 523 Antisense
GAGCCTACGGAACTCCAGACAAGTG 78 383 563 Antisense
TCAAGGATGCCTGTCCAACTGCTTA 144 633 614 Antisense
Sequence Source Affymetrix Proprietary Database