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[193585_at] sodium/potassium transporting ATPase beta chain

Description C17E4.9 /REP_DB=WormBase Gene ID /WP=CE08258 /TR=Q93235 /GB=CAB02752.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=sodium-potassium transporting ATPase beta chain
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 03      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 80      6grp_total > 25      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 393.6
(3)
P 		269.6
(-0.1)
P 		210.9
(-1.6)
P 		153.6
(-3)
P 		240
B 380.5
(3)
P 		219.1
(-0.5)
P 		212.7
(-0.6)
P 		101.9
(-3)
P 		279
C 397
(3)
P 		218.3
(-0.7)
P 		226.8
(-0.5)
P 		107.1
(-3)
P 		290
avr 390.4
(3) 		235.7
(-0.4) 		216.8
(-0.9) 		120.9
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 292.8
(3)
P 		276.8
(2.4)
P 		275.5
(2.4)
P 		163.4
(-1.6)
P 		123.9
(-3)
P 		151.7
(-2)
P 		169
B 361.1
(3)
P 		316.4
(1.9)
P 		253.9
(0.5)
P 		173.9
(-1.4)
P 		106.1
(-3)
P 		199.2
(-0.8)
P 		255
C 394.5
(3)
P 		337.1
(1.8)
P 		198.3
(-1.3)
P 		243
(-0.3)
P 		118.6
(-3)
P 		174.9
(-1.8)
P 		276
avr 349.5
(3) 		310.1
(2) 		242.6
(0.3) 		193.4
(-1) 		116.2
(-3) 		175.3
(-1.5) 		233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 143.3
(3)
P 		58.5
(-1.2)
P 		55.1
(-1.4)
P 		22.5
(-3)
P 		121
B 121.4
(3)
P 		54.1
(-1.1)
P 		49.3
(-1.3)
P 		21.7
(-3)
P 		100
C 131.4
(3)
P 		62.8
(-0.6)
P 		79
(0.2)
P 		18.1
(-3)
P 		113
avr 132
(3) 		58.5
(-1) 		61.1
(-0.8) 		20.8
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 54
(-1.3)
P 		98.5
(3)
P 		60
(-0.8)
P 		41.4
(-2.6)
P 		37.4
(-3)
P 		36.9
(-3)
P 		62
B 125.6
(3)
P 		105.3
(1.5)
P 		61.7
(-1.6)
P 		46.1
(-2.8)
P 		43.1
(-3)
P 		74.3
(-0.7)
P 		83
C 146.2
(3)
P 		102.9
(0.6)
P 		50.5
(-2.3)
P 		48.9
(-2.4)
P 		38.4
(-3)
P 		58.5
(-1.9)
P 		108
avr 108.6
(3) 		102.2
(2.4) 		57.4
(-1.5) 		45.5
(-2.5) 		39.6
(-3) 		56.6
(-1.5) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1508
Sequence Type Exemplar sequence
Representative Public ID C17E4.9 NCBI
Target Description C17E4.9 /REP_DB=WormBase Gene ID /WP=CE08258 /TR=Q93235 /GB=CAB02752.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=sodium-potassium transporting ATPase beta chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060105 NCBI Caenorhabditis elegans C17E4.9 (C17E4.9) mRNA, complete cds. 11/11 None
GENEFINDER00000000966 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9439479:9448889:1 10/11 None
SNAP00000000955 ENSEMBL cdna:SNAP chromosome:CEL140:I:9439512:9440872:1 11/11 None
C17E4.9 ENSEMBL cdna:known chromosome:CEL140:I:9439373:9442239:1 gene:C17E4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9439409-9440803(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/potassium transporting ATPase beta chain
Ensembl C17E4.9
Entrez Gene 182726 Entrez gene
SwissProt Q93235 EMBL-EBI
WormBase CE08258 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625215_S_AT nervana 2 dm
DROSGENOME1:152490_AT nervana 2 dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5391 sodium:potassium-exchanging ATPase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02752 Hypothetical protein C17E4.9 [Caenorhabditis elegans] ref|NP_492506.1| C17E4.9 [Caenorhabditis elegans] 1.0E-180
blast CAB02752 Hypothetical protein C17E4.9 [Caenorhabditis elegans] ref|NP_492506.1| C17E4.9 [Caenorhabditis elegans] 1.0E-173
blast CAB02752 Hypothetical protein C17E4.9 [Caenorhabditis elegans] ref|NP_492506.1| C17E4.9 [Caenorhabditis elegans] 1.0E-169
blast CAE60188 Hypothetical protein CBG03745 [Caenorhabditis briggsae] 1.0E-164
blast CAB02748 Hypothetical protein C17E4.10 [Caenorhabditis elegans] ref|NP_492507.2| C17E4.10 [Caenorhabditis elegans] 1.0E-160
blast CAE60188 Hypothetical protein CBG03745 [Caenorhabditis briggsae] 1.0E-160
blast CAE60188 Hypothetical protein CBG03745 [Caenorhabditis briggsae] 1.0E-154
blast CAE63086 Hypothetical protein CBG07375 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000402 EMBL-EBI Na+/K+ ATPase, beta subunit 9.8E-59
Pfam IPR000402 EMBL-EBI Na+/K+ ATPase, beta subunit 2.6E-57
Pfam IPR000402 EMBL-EBI Na+/K+ ATPase, beta subunit 3.4E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492506.1 1 53-75
C17E4.9 1 53-75
GENEFINDER00000000966 1 53-75
SNAP00000000955 1 42-64
Sequence
Target Sequence 
>C. ELEGANS:193585_AT
gagactcgtgagtgtggagccggagatagcaatgatgatcttgagaaaaatccagatgct
cttccttgccgtttcgatctctcagttttcgataaaggttgtagtgagaaatccgatttc
ggatacaagtctggaaagccatgcgtcattatttctttgaatcgtctcatcggatggcgt
ccaactgattatcaagagaattccgtgccagaagaagtaaaagaccgttacaaggctgga
tcgattgctataaattgccgaggagctacaaatgtcgatcaggaacacattggaaaagtt
acctacatgccatcaaatggaattgacggacgctattatccatacgttttcaccaaggga
taccaacaaccaatcgcaatggtcaaattcgacacaattccacgaaataagctggtgatt
gttgaatgccgtgcatatgctctcaacatcgaacacgacatctcctctcgactcggaatg
gtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTCGTGAGTGTGGAGCCGGAG 361 393 439 Antisense
CCGTTTCGATCTCTCAGTTTTCGAT 361 263 507 Antisense
AAGCCATGCGTCATTATTTCTTTGA 371 149 574 Antisense
GAATCGTCTCATCGGATGGCGTCCA 553 329 597 Antisense
GGATGGCGTCCAACTGATTATCAAG 475 515 610 Antisense
AAGACCGTTACAAGGCTGGATCGAT 499 149 659 Antisense
GGAAAAGTTACCTACATGCCATCAA 596 527 730 Antisense
GCTATTATCCATACGTTTTCACCAA 112 305 770 Antisense
AGCTGGTGATTGTTGAATGCCGTGC 318 81 848 Antisense
AATGCCGTGCATATGCTCTCAACAT 134 167 863 Antisense
ATCTCCTCTCGACTCGGAATGGTGT 581 31 898 Antisense
Sequence Source Affymetrix Proprietary Database