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[193576_at] homeobox protein (so subfamily)

Description W05E10.3 /REP_DB=WormBase Gene ID /WP=CE06550 /GEN=ceh-32 /TR=SW:Q23175 /GB=CAB01249.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=homeobox protein (so subfamily)
Cluster 6grp_total > 07      4grp_total > 46      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 484
1 2 3 4 range
A 662.1
(3)
P 		273.1
(-2)
A 		228
(-2.6)
A 		193.9
(-3)
A 		468
B 601.1
(3)
P 		312.7
(-1.1)
A 		178.4
(-3)
A 		256
(-1.9)
A 		423
C 659.7
(3)
P 		302.3
(-1.9)
A 		282.9
(-2.2)
A 		224.8
(-3)
A 		435
avr 641
(3) 		296
(-2) 		229.8
(-2.9) 		224.9
(-3) 		416

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 594
1 2 3 4 5 6 range
A 616.2
(3)
P 		400.7
(-0)
P 		188.9
(-3)
A 		209.9
(-2.7)
A 		196.7
(-2.9)
A 		231
(-2.4)
A 		427
B 626.3
(3)
P 		355
(-0.6)
P 		276.7
(-1.6)
M 		235.9
(-2.2)
A 		172.3
(-3)
A 		197.9
(-2.7)
A 		454
C 751
(3)
P 		338.5
(-1.2)
P 		198.3
(-2.6)
A 		268.3
(-1.9)
A 		156.9
(-3)
A 		204.5
(-2.5)
M 		594
avr 664.5
(3) 		364.7
(-0.7) 		221.3
(-2.4) 		238
(-2.2) 		175.3
(-3) 		211.1
(-2.6) 		489
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 241.1
(3)
P 		59.3
(-2.1)
A 		59.6
(-2.1)
A 		28.4
(-3)
A 		213
B 191.7
(3)
P 		77.2
(-1.6)
A 		41.3
(-3)
A 		54.6
(-2.5)
A 		150
C 218.4
(3)
P 		86.9
(-1.4)
A 		98.6
(-1)
A 		37.9
(-3)
A 		181
avr 217.1
(3) 		74.5
(-1.8) 		66.5
(-2.1) 		40.3
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 113.6
(1.3)
P 		142.5
(3)
P 		41.1
(-3)
A 		53.2
(-2.3)
A 		59.4
(-1.9)
A 		56.2
(-2.1)
A 		101
B 217.9
(3)
P 		118.2
(-0.8)
P 		67.2
(-2.8)
M 		62.5
(-3)
A 		70
(-2.7)
A 		73.8
(-2.6)
A 		155
C 278.4
(3)
P 		103.3
(-1.6)
P 		50.5
(-3)
A 		54
(-2.9)
A 		50.8
(-3)
A 		68.5
(-2.5)
M 		228
avr 203.3
(3) 		121.3
(-0.3) 		52.9
(-3) 		56.6
(-2.9) 		60.1
(-2.7) 		66.2
(-2.5) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13515
Sequence Type Exemplar sequence
Representative Public ID W05E10.3 NCBI
Target Description W05E10.3 /REP_DB=WormBase Gene ID /WP=CE06550 /GEN=ceh-32 /TR=SW:Q23175 /GB=CAB01249.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=homeobox protein (so subfamily)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073557(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073557 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-32) (ceh-32) mRNA, complete cds. 11/11 A 
SNAP00000019388 ENSEMBL cdna:SNAP chromosome:CEL140:V:11704868:11706144:-1 11/11 None
GENEFINDER00000019395 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11704868:11718420:-1 11/11 None
W05E10.3.2 ENSEMBL cdna:known chromosome:CEL140:V:11704350:11707989:-1 gene:W05E10.3 11/11 None
W05E10.3.1 ENSEMBL cdna:known chromosome:CEL140:V:11704350:11707990:-1 gene:W05E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11704867-11707932(-) 100.0 100.0
Public Domain and Genome References
Gene Title homeobox protein (so subfamily)
Gene Symbol ceh-32
Ensembl W05E10.3
Entrez Gene 179603 Entrez gene
SwissProt Q23175 EMBL-EBI
WormBase CE29364 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01249 Hypothetical protein W05E10.3 [Caenorhabditis elegans] ref|NP_505958.1| C.Elegans Homeobox family member (ceh-32) [Caenorhabditis elegans] gb|AAG49583.1| CEH-32 [Caenorhabditis elegans] sp|Q23175|HM32_CAEEL Homeobox protein ceh-32 0.0
blast T26192 hypothetical protein W05E10.3 - Caenorhabditis elegans 0.0
blast CAB01250 Hypothetical protein W05E10.4 [Caenorhabditis elegans] ref|NP_505959.1| W05E10.4 [Caenorhabditis elegans] emb|CAD54509.1| trehalase [Caenorhabditis elegans] 0.0
blast CAE75311 Hypothetical protein CBG23281 [Caenorhabditis briggsae] 0.0
blast CAE75312 Hypothetical protein CBG23282 [Caenorhabditis briggsae] 1.0E-169
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.9999998989515E-5
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.99999994947575E-5
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 6.00000021222513E-6
scop a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain 2.59999990463257
Pfam IPR001356 EMBL-EBI Homeobox 4.4E-10
Pfam IPR001356 EMBL-EBI Homeobox 4.4E-10
Pfam IPR001356 EMBL-EBI Homeobox 4.4E-10
Pfam IPR001661 EMBL-EBI Glycoside hydrolase, family 37 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193576_AT
gaggcaacgagatcgggcagcagctgcaaaaaataagcaaaacatcatcggagtggaatt
gaagaaaacatcgtccgacatgtcagattcagatgatgattttgaggattcaatgactga
ttctccaagcccaattgatgaaccgaaagatctcagcaaaagtcatattccaaagctctc
accaacactcttacctaaaatggcgactccattcgatatgttcgcagctgcagcaaatcc
attgatgatgttgaacttgaatccagctctctacatgcaattccacaactttttcaacac
aatgaggaacccacaaattgacgaagaagaaaatagcgagacaacggttgaagttgaagc
tgatattgagccaccgaagaaacgatcaaaattgagtattgatgagattttgaatatcaa
atcagaagtgtccccttcacaatgctcaccctgctccaatgaatcactttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCAACGAGATCGGGCAGCAGCT 472 405 690 Antisense
AACATCGTCCGACATGTCAGATTCA 666 135 756 Antisense
GATTCTCCAAGCCCAATTGATGAAC 166 433 808 Antisense
AAGTCATATTCCAAAGCTCTCACCA 626 157 849 Antisense
CTCACCAACACTCTTACCTAAAATG 269 225 867 Antisense
GACTCCATTCGATATGTTCGCAGCT 611 373 894 Antisense
GTTCGCAGCTGCAGCAAATCCATTG 457 441 909 Antisense
GTTGAACTTGAATCCAGCTCTCTAC 453 439 939 Antisense
TACATGCAATTCCACAACTTTTTCA 94 645 961 Antisense
ATCAGAAGTGTCCCCTTCACAATGC 51 29 1110 Antisense
ACCCTGCTCCAATGAATCACTTTCT 321 91 1137 Antisense
Sequence Source Affymetrix Proprietary Database