[Home] | [Total List]

[193575_s_at]

Description F14E5.2 /REP_DB=WormBase Gene ID /WP=CE03205 /TR=Q19459 /GB=CAA91405.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cysteine-rich fibroblast growth factor receptor
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 66      6grp_total > 50      4grp_total > 38      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 1634.7
(3)
P 		1519.7
(1.6)
P 		1156.9
(-3)
P 		1449.1
(0.7)
P 		478
B 1614.4
(3)
P 		1128.2
(-3)
P 		1187.8
(-2.3)
P 		1289.8
(-1)
P 		486
C 1545.4
(3)
P 		1214.2
(-2.1)
P 		1159.4
(-3)
P 		1162
(-3)
P 		386
avr 1598.2
(3) 		1287.4
(-1.3) 		1168
(-3) 		1300.3
(-1.2) 		430

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1194
1 2 3 4 5 6 range
A 1537.6
(-1)
P 		1563.9
(-0.8)
P 		1509.6
(-1.2)
P 		2220.3
(3)
P 		1194.7
(-3)
P 		1457.4
(-1.5)
P 		1026
B 1523.2
(1.6)
P 		1381.2
(0.3)
P 		1500.1
(1.4)
P 		1675.6
(3)
P 		1026.7
(-3)
P 		1149.5
(-1.9)
P 		649
C 1914.2
(1.4)
P 		1445.4
(-1.3)
P 		2024.8
(2.1)
P 		2188.4
(3)
P 		1267.1
(-2.3)
P 		1151.9
(-3)
P 		1037
avr 1658.3
(0.4) 		1463.5
(-0.9) 		1678.2
(0.6) 		2028.1
(3) 		1162.8
(-3) 		1252.9
(-2.4) 		865
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 595.2
(3)
P 		329.9
(-1.2)
P 		302.4
(-1.6)
P 		212.1
(-3)
P 		383
B 514.8
(3)
P 		278.6
(-2.9)
P 		275.2
(-3)
P 		274.9
(-3)
P 		240
C 511.6
(3)
P 		349.1
(-0.1)
P 		404.1
(1)
P 		195.9
(-3)
P 		316
avr 540.5
(3) 		319.2
(-1.2) 		327.2
(-1.1) 		227.6
(-3) 		313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 283.4
(-3)
P 		556.2
(2.9)
P 		328.7
(-2)
P 		563.1
(3)
P 		360.5
(-1.3)
P 		354.8
(-1.5)
P 		280
B 530
(3)
P 		459.7
(0.5)
P 		364.3
(-3)
P 		443.8
(-0.1)
P 		417.1
(-1.1)
P 		428.6
(-0.7)
P 		166
C 709.5
(3)
P 		441
(-2)
P 		515.4
(-0.6)
P 		440.1
(-2)
P 		410
(-2.5)
P 		385.6
(-3)
P 		324
avr 507.6
(3) 		485.6
(1.9) 		402.8
(-2.3) 		482.3
(1.7) 		395.9
(-2.7) 		389.7
(-3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193575_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3669
Sequence Type Exemplar sequence
Representative Public ID F14E5.2 NCBI
Target Description F14E5.2 /REP_DB=WormBase Gene ID /WP=CE03205 /TR=Q19459 /GB=CAA91405.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cysteine-rich fibroblast growth factor receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026917(11), NM_001026916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026917 NCBI Caenorhabditis elegans F14E5.2b (F14E5.2) mRNA, complete cds. 11/11 None
NM_001026916 NCBI Caenorhabditis elegans F14E5.2a (F14E5.2) mRNA, complete cds. 11/11 None
SNAP00000024805 ENSEMBL cdna:SNAP chromosome:CEL140:II:8424217:8428760:-1 11/11 None
GENEFINDER00000024813 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8424217:8428760:-1 11/11 None
F14E5.2b ENSEMBL cdna:known chromosome:CEL140:II:8423879:8428777:-1 gene:F14E5.2 11/11 A 
F14E5.2a ENSEMBL cdna:known chromosome:CEL140:II:8424217:8428760:-1 gene:F14E5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8424213-8428757(-) 100.0 100.0
Public Domain and Genome References
Ensembl F14E5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04737 Hypothetical protein F14E5.2b [Caenorhabditis elegans] ref|NP_001022088.1| F14E5.2b [Caenorhabditis elegans] 0.0
blast CAA91405 Hypothetical protein F14E5.2a [Caenorhabditis elegans] ref|NP_001022087.1| F14E5.2a [Caenorhabditis elegans] 0.0
blast CAE57685 Hypothetical protein CBG00683 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 2.5E-25
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 3.5E-21
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 2.3E-22
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 5.4E-18
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 3.5E-27
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 5.0E-25
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 3.4E-21
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 3.6E-20
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 2.6E-25
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 4.2E-21
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 1.5E-24
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 3.6E-20
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 2.6E-25
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 4.2E-21
Pfam IPR001893 EMBL-EBI Cysteine rich repeat 1.5E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022088.1 1 1115-1137
NP_001022087.1 1 1117-1139
F14E5.2b 1 1115-1137
F14E5.2a 1 1117-1139
SNAP00000024805 1 1115-1137
GENEFINDER00000024813 1 1117-1139
Sequence
Target Sequence 
>C. ELEGANS:193575_S_AT
cagaatcacattgacttctctccacgttgttctgccgaagtttcgagagctatagttgaa
gctgaatttgatccacagctcgatccaccactctacaatgcttgcaagagtactattaat
gatcattgttctgctaccatcatggaatcaggaggacattttgacaatgtcatggaatgt
ttgaaaaatgatttcaacaagggtctcattcgagataagcaatgctctgagcaagtggct
cgtcgtcttcaagaatctcttgttgatattcatttggatcctgttttgcacgaagcatgt
gccatggatattcagagatattgcagagatgttccgccaggccacagcagaattgttatg
tgtctcatggattcggctgacaagcaggaactatccaaggaatgcagcacaaaactgagt
gatcgaaacaagttgtggatgaaagctcactccgagttccaaatggctctacctgattct
tggcatgcatttgccaatcttgttatggaacatccagaaagaaattccattttgggatat
cttgctggatttatcgttttcattcttctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAATCACATTGACTTCTCTCCAC 610 203 2833 Antisense
CACGTTGTTCTGCCGAAGTTTCGAG 384 199 2855 Antisense
GAATTTGATCCACAGCTCGATCCAC 396 325 2896 Antisense
TCCACCACTCTACAATGCTTGCAAG 392 589 2916 Antisense
TGAGCAAGTGGCTCGTCGTCTTCAA 201 569 3060 Antisense
TTTGGATCCTGTTTTGCACGAAGCA 7 667 3105 Antisense
ATATTGCAGAGATGTTCCGCCAGGC 316 19 3150 Antisense
GGATGAAAGCTCACTCCGAGTTCCA 622 507 3269 Antisense
TCCGAGTTCCAAATGGCTCTACCTG 213 595 3283 Antisense
GCTCTACCTGATTCTTGGCATGCAT 220 301 3298 Antisense
GGATTTATCGTTTTCATTCTTCTTA 518 509 3379 Antisense
Sequence Source Affymetrix Proprietary Database