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[193573_at] Alcohol/other dehydrogenases, short chain type

Description F26D2.15 /REP_DB=WormBase Gene ID /WP=CE20725 /TR=Q9XTD5 /GB=CAB05801.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster 6grp_total > 90      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 28.4
(-1.6)
A 		37.6
(-0.9)
A 		9.2
(-3)
A 		89
(3)
A 		80
B 45.2
(3)
A 		23.4
(-0.3)
A 		19.1
(-0.9)
A 		5.4
(-3)
A 		40
C 26.2
(-1.8)
A 		25.9
(-2)
A 		24
(-3)
A 		34.9
(3)
A 		11
avr 33.3
(0.7) 		29
(-0.3) 		17.4
(-3) 		43.1
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 19.7
(-0.2)
A 		30.8
(2.1)
A 		11.2
(-2.1)
A 		22.5
(0.4)
A 		6.8
(-3)
A 		34.8
(3)
A 		28
B 27.5
(-0.1)
A 		22.8
(-0.7)
A 		3.6
(-3)
A 		8.5
(-2.4)
A 		53.7
(3)
A 		30.9
(0.3)
A 		50
C 31.8
(-0.3)
A 		37
(0.2)
A 		20.2
(-1.6)
A 		63.4
(3)
A 		27.6
(-0.8)
A 		6.7
(-3)
A 		57
avr 26.3
(1.4) 		30.2
(2.6) 		11.7
(-3) 		31.5
(3) 		29.4
(2.4) 		24.1
(0.8) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.3
(1.5)
A 		8.2
(0.3)
A 		2.4
(-3)
A 		13
(3)
A 		11
B 14.4
(3)
A 		5.8
(-0.9)
A 		4.4
(-1.5)
A 		1.1
(-3)
A 		13
C 8.7
(3)
A 		7.5
(0.4)
A 		8.4
(2.4)
A 		5.9
(-3)
A 		3
avr 11.1
(3) 		7.2
(-0.9) 		5.1
(-3) 		6.7
(-1.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.6
(-1.9)
A 		11
(3)
A 		2.4
(-2.7)
A 		5.7
(-0.5)
A 		2
(-3)
A 		8.5
(1.3)
A 		9
B 9.6
(-0.5)
A 		7.6
(-1.1)
A 		0.9
(-3)
A 		2.2
(-2.6)
A 		21.8
(3)
A 		11.5
(0)
A 		21
C 11.8
(2.4)
A 		11.3
(2.2)
A 		5.1
(-1.4)
A 		12.8
(3)
A 		8.9
(0.8)
A 		2.2
(-3)
A 		11
avr 8.3
(1.1) 		10
(2.3) 		2.8
(-3) 		6.9
(0) 		10.9
(3) 		7.4
(0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12746
Sequence Type Exemplar sequence
Representative Public ID F26D2.15 NCBI
Target Description F26D2.15 /REP_DB=WormBase Gene ID /WP=CE20725 /TR=Q9XTD5 /GB=CAB05801.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074756 NCBI Caenorhabditis elegans F26D2.15 (F26D2.15) mRNA, complete cds. 11/11 None
SNAP00000031127 ENSEMBL cdna:SNAP chromosome:CEL140:V:16441035:16441517:1 10/11 None
GENEFINDER00000031140 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16441035:16441517:1 10/11 None
F26D2.15 ENSEMBL cdna:known chromosome:CEL140:V:16440429:16441517:1 gene:F26D2.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16440428-16441517(+) 100.0 100.0
Public Domain and Genome References
Gene Title Alcohol/other dehydrogenases, short chain type
Ensembl F26D2.15
Entrez Gene 184969 Entrez gene
SwissProt Q9XTD5 EMBL-EBI
WormBase CE20725 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05801 Hypothetical protein F26D2.15 [Caenorhabditis elegans] emb|CAB04187.1| Hypothetical protein F26D2.15 [Caenorhabditis elegans] ref|NP_507157.1| F26D2.15 [Caenorhabditis elegans] 1.0E-152
blast AAK18930 Hypothetical protein F12E12.7 [Caenorhabditis elegans] ref|NP_494640.1| F12E12.7 [Caenorhabditis elegans] 1.0E-106
blast NP_503753 R05D8.9 [Caenorhabditis elegans] gb|AAF39944.1| Hypothetical protein R05D8.9 [Caenorhabditis elegans] 1.0E-104
blast CAB05801 Hypothetical protein F26D2.15 [Caenorhabditis elegans] emb|CAB04187.1| Hypothetical protein F26D2.15 [Caenorhabditis elegans] ref|NP_507157.1| F26D2.15 [Caenorhabditis elegans] 2.0E-69
blast CAB03851 Hypothetical protein C06B8.3 [Caenorhabditis elegans] ref|NP_506855.1| C06B8.3 [Caenorhabditis elegans] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.3E-45
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:193573_AT
tggatgctcaggggcgtgttggaatggatcaggatatttcggtgttcgataacactatgc
agatcaatatgagaagtgtggttactttggtgcaaaaggccaaggagcatttgatcaaat
caaagggagaaatcattaatgtttctgccatggcagcaggacaccatggggaccccatag
caactttctacggaatgtccaaggcagctcttgatcagttcactagaagctctgcgattt
ctctgatccaacacggagtccgcgtgaactccgtcagtcctggatttactaagacaggat
tcggagaagccatgggatttccaccaatagcgatgaaaaaggtcataagcttctacgaat
cccacaaggagtgtgctccgagtggtgcaattgctcaacctggagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATGCTCAGGGGCGTGTTGGAAT 235 549 308 Antisense
ATGGCAGCAGGACACCATGGGGACC 218 53 457 Antisense
ACCCCATAGCAACTTTCTACGGAAT 56 89 479 Antisense
GTCCAAGGCAGCTCTTGATCAGTTC 70 477 504 Antisense
GATCAGTTCACTAGAAGCTCTGCGA 282 421 520 Antisense
GATCCAACACGGAGTCCGCGTGAAC 83 415 552 Antisense
GAACTCCGTCAGTCCTGGATTTACT 690 347 573 Antisense
GAGAAGCCATGGGATTTCCACCAAT 99 391 611 Antisense
GGTCATAAGCTTCTACGAATCCCAC 173 501 648 Antisense
GGAGTGTGCTCCGAGTGGTGCAATT 51 515 675 Antisense
GGTGCAATTGCTCAACCTGGAGACA 289 501 691 Antisense
Sequence Source Affymetrix Proprietary Database