[Home] | [Total List]

[193571_at] Eukaryotic ribosomal protein L18

Description Y45F10D.12 /REP_DB=WormBase Gene ID /WP=CE16650 /GEN=rpl-18 /TR=O45946 /GB=CAA16387.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Eukaryotic ribosomal protein L18
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 32      4grp_total > 17      6grp_cgc > 60      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13669
1 2 3 4 range
A 24230.4
(-3)
P 		29447.6
(-0.4)
P 		29449.4
(-0.4)
P 		36136
(3)
P 		11906
B 25673.7
(-3)
P 		25913.6
(-2.7)
P 		27739.6
(-0.7)
P 		30979.7
(3)
P 		5306
C 22467.2
(-3)
P 		25941.8
(-1.2)
P 		23718.1
(-2.4)
P 		34317.5
(3)
P 		11850
avr 24123.8
(-3) 		27101
(-1.2) 		26969
(-1.2) 		33811.1
(3) 		9687

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11089
1 2 3 4 5 6 range
A 21079.6
(1.4)
P 		20739.2
(1)
P 		21518.3
(1.9)
P 		22498.1
(3)
P 		17191.8
(-3)
P 		20654.7
(0.9)
P 		5306
B 22854.5
(3)
P 		19977.3
(1)
P 		16661.3
(-1.2)
P 		18265.7
(-0.1)
P 		16772.7
(-1.2)
P 		14102.8
(-3)
P 		8752
C 22926.4
(2.1)
P 		19875.6
(0.5)
P 		24510.2
(3)
P 		21355.7
(1.3)
P 		22205
(1.8)
P 		13421.5
(-3)
P 		11089
avr 22286.8
(3) 		20197.4
(1) 		20896.6
(1.7) 		20706.5
(1.5) 		18723.2
(-0.4) 		16059.7
(-3) 		6227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3533
1 2 3 4 range
A 8822.3
(3)
P 		6392.3
(-1.1)
P 		7698.6
(1.1)
P 		5289.6
(-3)
P 		3533
B 8187.2
(3)
P 		6400.1
(-3)
P 		6427.9
(-2.9)
P 		6601.8
(-2.3)
P 		1787
C 7437.3
(1)
P 		7458.4
(1)
P 		8266.5
(3)
P 		5786.5
(-3)
P 		2480
avr 8148.9
(3) 		6750.3
(-0.7) 		7464.3
(1.2) 		5892.6
(-3) 		2256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4612
1 2 3 4 5 6 range
A 3885.9
(-3)
P 		7375.9
(3)
P 		4686.2
(-1.6)
P 		5706
(0.1)
P 		5187.7
(-0.8)
P 		5028.8
(-1)
P 		3490
B 7952.2
(3)
P 		6649.6
(1)
P 		4045.9
(-3)
P 		4838
(-1.8)
P 		6814.5
(1.3)
P 		5258.9
(-1.1)
P 		3906
C 8497.8
(3)
P 		6064.6
(-0.5)
P 		6238.3
(-0.2)
P 		4294.7
(-3)
P 		7185.2
(1.1)
P 		4493
(-2.7)
P 		4203
avr 6778.6
(3) 		6696.7
(2.7) 		4990.1
(-2.8) 		4946.2
(-2.9) 		6395.8
(1.8) 		4926.9
(-3) 		1852
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193571_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10013
Sequence Type Exemplar sequence
Representative Public ID Y45F10D.12 NCBI
Target Description Y45F10D.12 /REP_DB=WormBase Gene ID /WP=CE16650 /GEN=rpl-18 /TR=O45946 /GB=CAA16387.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Eukaryotic ribosomal protein L18
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070254(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070254 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-18) (rpl-18) mRNA, complete cds. 11/11 None
SNAP00000025704 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13776838:13778717:1 11/11 None
GENEFINDER00000025732 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13777246:13778717:1 11/11 None
Y45F10D.12.3 ENSEMBL cdna:known chromosome:CEL140:IV:13777827:13778783:1 gene:Y45F10D.12 11/11 None
Y45F10D.12.1 ENSEMBL cdna:known chromosome:CEL140:IV:13777827:13778783:1 gene:Y45F10D.12 11/11 None
Y45F10D.12.2 ENSEMBL cdna:known chromosome:CEL140:IV:13777834:13778783:1 gene:Y45F10D.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13777923-13778723(+) 99.65 99.65
Public Domain and Genome References
Gene Title Eukaryotic ribosomal protein L18
Gene Symbol rpl-18
Ensembl Y45F10D.12
Entrez Gene 178342 Entrez gene
SwissProt O45946 EMBL-EBI
WormBase CE16650 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246758_AT 60S ribosomal protein L18 (RPL18C) at
DROSOPHILA_2:1629400_AT Ribosomal protein L18 dm
DROSGENOME1:148318_AT Ribosomal protein L18 dm
PLASMODIUM_ANOPHELES:200022_AT ribosomal protein L18 hs
HG-U133_PLUS_2:200022_AT ribosomal protein L18 hs
HG-FOCUS:200022_AT ribosomal protein L18 hs
HG-U133A:200022_AT ribosomal protein L18 hs
HG-U133B:200022_AT ribosomal protein L18 hs
HG-U133A_2:200022_AT ribosomal protein L18 hs
U133_X3P:200022_AT ribosomal protein L18 hs
HUGENEFL:L11566_AT ribosomal protein L18 hs
U133_X3P:G4506606_3P_AT ribosomal protein L18 hs
HG-U95AV2:31546_AT ribosomal protein L18 hs
U133_X3P:HS.75458.2.S1_3P_X_AT Ribosomal protein L18 hs
U133_X3P:HS.75458.2.S1_3P_AT Ribosomal protein L18 hs
HG-U133A_2:214335_AT Ribosomal protein L18 hs
HG-U133_PLUS_2:214335_AT Ribosomal protein L18 hs
HG-U133A:214335_AT Ribosomal protein L18 hs
HG-U133A_2:222297_X_AT Ribosomal protein L18 hs
HG-U133_PLUS_2:222297_X_AT Ribosomal protein L18 hs
HG-U133A:222297_X_AT Ribosomal protein L18 hs
U133_X3P:HS.317387.0.S1_3P_X_AT Ribosomal protein L18 hs
MOUSE430A_2:1450372_A_AT ribosomal protein L18 mm
MOUSE430_2:1450372_A_AT ribosomal protein L18 mm
MOE430A:1450372_A_AT ribosomal protein L18 mm
MOUSE430_2:1456447_AT ribosomal protein L18 mm
MOUSE430A_2:1456447_AT ribosomal protein L18 mm
MOE430A:1456447_AT ribosomal protein L18 mm
MOE430A:1436699_X_AT ribosomal protein L18 mm
MOUSE430A_2:1436699_X_AT ribosomal protein L18 mm
MOUSE430_2:1436699_X_AT ribosomal protein L18 mm
MU11KSUBA:L04128_F_AT ribosomal protein L18 mm
MU11KSUBA:L04128_R_AT ribosomal protein L18 mm
MG-U74AV2:160476_F_AT ribosomal protein L18 mm
MOE430A:1437005_A_AT ribosomal protein L18 mm
MOUSE430A_2:1437005_A_AT ribosomal protein L18 mm
MOUSE430_2:1437005_A_AT ribosomal protein L18 mm
MU19KSUBA:TC14238_F_AT Ribosomal protein L18 (Rpl18), mRNA mm
RG-U34A:M20156_AT ribosomal protein L18 rn
RAE230A:1367623_AT ribosomal protein L18 rn
RAT230_2:1367623_AT ribosomal protein L18 rn
YEAST_2:1771055_AT Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein Sc
YEAST_2:1778798_S_AT Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16387 Hypothetical protein Y45F10D.12 [Caenorhabditis elegans] ref|NP_502655.1| Ribosomal Protein, Large subunit family member (rpl-18) [Caenorhabditis elegans] 1.0E-101
blast CAA16387 Hypothetical protein Y45F10D.12 [Caenorhabditis elegans] ref|NP_502655.1| Ribosomal Protein, Large subunit family member (rpl-18) [Caenorhabditis elegans] 1.0E-100
blast CAE74591 Hypothetical protein CBG22372 [Caenorhabditis briggsae] 3.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000039 EMBL-EBI Ribosomal protein L18e 1.7E-104
Pfam IPR000039 EMBL-EBI Ribosomal protein L18e 1.7E-104
Pfam IPR000039 EMBL-EBI Ribosomal protein L18e 1.7E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000025704 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:193571_AT
atatcaaccacaagcacgatcgcgtcgcccgcagaacggcaccaaagagtgagaaccctt
acctccgtcttctgtccaagctctacgctttcctcgctagacgcactggagagaagttca
acgccatcgtcttgaagagactccgcatgtcccgtcgtaaccgtcagccactctcgctcg
ccaagcttgcccgcgccgtccagaaggctggaaacgagaacaagactgttgtcaccctct
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCAACCACAAGCACGATCGCGT 498 19 23 Antisense
GCCCGCAGAACGGCACCAAAGAGTG 77 287 49 Antisense
CAAAGAGTGAGAACCCTTACCTCCG 637 191 65 Antisense
TTTCCTCGCTAGACGCACTGGAGAG 563 669 111 Antisense
TCCTCGCTAGACGCACTGGAGAGAA 535 593 113 Antisense
TGGAGAGAAGTTCAACGCCATCGTC 589 549 129 Antisense
CGCCATCGTCTTGAAGAGACTCCGC 50 257 144 Antisense
TCTTGAAGAGACTCCGCATGTCCCG 297 619 152 Antisense
CCGCGCCGTCCAGAAGGCTGGAAAC 131 261 213 Antisense
GAAGGCTGGAAACGAGAACAAGACT 491 333 225 Antisense
AGAACAAGACTGTTGTCACCCTCTC 526 73 239 Antisense
Sequence Source Affymetrix Proprietary Database