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[193570_at] serine/ threonine specific protein phosphatase

Description ZC477.2 /REP_DB=WormBase Gene ID /WP=CE05058 /TR=Q23345 /GB=AAK19008.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=serine- threonine specific protein phosphatase
Cluster 6grp_total > 99      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 14
(-3)
A 		29.5
(-1.9)
A 		54
(-0.2)
A 		99.3
(3)
P 		85
B 37.6
(0.2)
A 		7.6
(-3)
A 		29.3
(-0.7)
A 		63.1
(3)
P 		56
C 4.2
(-3)
A 		37.8
(-1)
A 		15
(-2.4)
A 		106.3
(3)
P 		102
avr 18.6
(-3) 		25
(-2.5) 		32.8
(-1.8) 		89.6
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 49.1
(-0.1)
A 		19.2
(-3)
A 		45.4
(-0.4)
A 		60.6
(1)
A 		80.6
(3)
A 		60.5
(1)
A 		61
B 24
(-2.8)
A 		21.7
(-3)
A 		49.3
(-0.4)
A 		30.6
(-2.2)
A 		70
(1.5)
A 		86.5
(3)
P 		65
C 12.7
(-2.5)
A 		51.2
(1.3)
A 		7.2
(-3)
A 		8.2
(-2.9)
A 		53.1
(1.5)
A 		68.2
(3)
P 		61
avr 28.6
(-3) 		30.7
(-2.7) 		34
(-2.2) 		33.1
(-2.4) 		67.9
(2.5) 		71.7
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.1
(-3)
A 		6.4
(-2.2)
A 		14.1
(2.7)
A 		14.5
(3)
P 		9
B 12
(2.3)
A 		1.9
(-3)
A 		6.8
(-0.4)
A 		13.4
(3)
P 		12
C 1.4
(-3)
A 		10.9
(0.5)
A 		5.2
(-1.6)
A 		17.9
(3)
P 		17
avr 6.2
(-3) 		6.4
(-2.9) 		8.7
(-1.4) 		15.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 9
(-2.2)
A 		6.8
(-3)
A 		9.9
(-1.9)
A 		15.4
(-0.1)
A 		24.3
(3)
A 		14.7
(-0.3)
A 		18
B 8.4
(-2.7)
A 		7.2
(-3)
A 		12
(-1.8)
A 		8.1
(-2.8)
A 		28.4
(2.1)
A 		32.2
(3)
P 		25
C 4.7
(-2.1)
A 		15.6
(1)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		17.2
(1.4)
A 		22.8
(3)
P 		21
avr 7.4
(-3) 		9.9
(-2.1) 		7.9
(-2.8) 		8.4
(-2.6) 		23.3
(3) 		23.2
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8795
Sequence Type Exemplar sequence
Representative Public ID ZC477.2 NCBI
Target Description ZC477.2 /REP_DB=WormBase Gene ID /WP=CE05058 /TR=Q23345 /GB=AAK19008.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=serine- threonine specific protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068710 NCBI Caenorhabditis elegans ZC477.2 (ZC477.2) mRNA, complete cds. 11/11 None
SNAP00000039649 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7108205:7109875:1 10/11 None
GENEFINDER00000039667 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7108205:7110242:1 11/11 None
ZC477.2 ENSEMBL cdna:known chromosome:CEL140:IV:7108205:7109896:1 gene:ZC477.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7108210-7109881(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/ threonine specific protein phosphatase
Ensembl ZC477.2
Entrez Gene 177485 Entrez gene
SwissProt Q23345 EMBL-EBI
WormBase CE35146 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK19008 Hypothetical protein ZC477.2 [Caenorhabditis elegans] ref|NP_501111.2| ZC477.2 [Caenorhabditis elegans] 0.0
blast CAE61803 Hypothetical protein CBG05769 [Caenorhabditis briggsae] 1.0E-59
blast AAB92072 Hypothetical protein F42G8.8 [Caenorhabditis elegans] ref|NP_501356.1| F42G8.8 [Caenorhabditis elegans] 8.0E-59
blast AAB92072 Hypothetical protein F42G8.8 [Caenorhabditis elegans] ref|NP_501356.1| F42G8.8 [Caenorhabditis elegans] 9.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 7.4E-28
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 5.3E-24
Sequence
Target Sequence 
>C. ELEGANS:193570_AT
acgttctcaccaaatcacttcaagaagattcataaaaaattcaacgaagcgttttcttgg
atgccattggcggcggttgttggccagaaaatattgtgtgttcatggaggaatttctcct
cgtttgacttcatgggaagatattagaaagataaaacgaccacttaaggatgccactgag
gatccattggcaaccgacctgcttttcgccgatactttggattttgatcttattcatatt
cccacaagaaaaccaaaatatgaattcaacgtgattcgaaatatgtctgtcatgtacaat
gaagctgctgtgacacaattttgcgagaaattcaatttaaaattaattataagaagtcat
atgaaagtaccatttgggtatcgattcttttctgagaaacgattgattactatattcaat
tctactggatttcaaaatgaatcgaattacggagcagtgctcaaaattgacgggaacgct
aaaattacaatcatcagtttgttgccacagcagtcaaaagcagaagttcaagagaaagca
catcattccgatatgacttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTTCTCACCAAATCACTTCAAGA 364 93 478 Antisense
CGAAGCGTTTTCTTGGATGCCATTG 606 253 522 Antisense
TGCCATTGGCGGCGGTTGTTGGCCA 134 587 539 Antisense
TTTCTCCTCGTTTGACTTCATGGGA 604 669 590 Antisense
AAACGACCACTTAAGGATGCCACTG 537 121 631 Antisense
CCTGCTTTTCGCCGATACTTTGGAT 364 267 675 Antisense
TTTTGATCTTATTCATATTCCCACA 180 679 699 Antisense
GAAGCTGCTGTGACACAATTTTGCG 418 343 778 Antisense
ACCATTTGGGTATCGATTCTTTTCT 25 87 846 Antisense
ATCATCAGTTTGTTGCCACAGCAGT 15 31 967 Antisense
GCACATCATTCCGATATGACTTCTG 241 317 1015 Antisense
Sequence Source Affymetrix Proprietary Database