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[193560_s_at]

Description W01C8.6 /REP_DB=WormBase Gene ID /WP=CE28498 /GEN=cat-1 /TR=Q9GNP0 /GB=AAG00026.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=synaptic vesicle amine transporter
Cluster 6grp_high1_10_10 > 06      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_total > 06      4grp_total > 46      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 341.9
(3)
P 		219.4
(-0.5)
P 		135.5
(-2.9)
P 		131.8
(-3)
P 		210
B 336
(3)
P 		183.1
(-2)
P 		202.3
(-1.3)
P 		151.3
(-3)
P 		185
C 481.3
(3)
P 		231.9
(-1.3)
P 		161.4
(-2.5)
P 		130.9
(-3)
P 		350
avr 386.4
(3) 		211.5
(-1.2) 		166.4
(-2.3) 		138
(-3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 216.7
(1.5)
P 		251.9
(3)
P 		153.2
(-1.3)
P 		162.8
(-0.9)
P 		115.5
(-3)
P 		118.3
(-2.9)
P 		136
B 328.2
(3)
P 		146
(-2.3)
P 		155.3
(-2.1)
P 		123.4
(-3)
P 		175.8
(-1.5)
P 		139.6
(-2.5)
P 		205
C 259.1
(3)
P 		213.8
(1.2)
P 		176.6
(-0.2)
P 		127.9
(-2.2)
M 		140
(-1.7)
P 		106.7
(-3)
P 		152
avr 268
(3) 		203.9
(0.4) 		161.7
(-1.4) 		138
(-2.3) 		143.8
(-2.1) 		121.5
(-3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 124.5
(3)
P 		47.6
(-1.4)
P 		35.4
(-2.1)
P 		19.3
(-3)
P 		105
B 107.1
(3)
P 		45.2
(-2)
P 		46.9
(-1.8)
P 		32.2
(-3)
P 		75
C 159.3
(3)
P 		66.7
(-1)
P 		56.2
(-1.5)
P 		22.1
(-3)
P 		137
avr 130.3
(3) 		53.2
(-1.4) 		46.2
(-1.8) 		24.5
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 39.9
(-1.9)
P 		89.6
(3)
P 		33.4
(-2.5)
P 		41.3
(-1.8)
P 		34.8
(-2.4)
P 		28.8
(-3)
P 		61
B 114.2
(3)
P 		48.6
(-1.8)
P 		37.7
(-2.6)
P 		32.7
(-3)
P 		71.4
(-0.2)
P 		52.1
(-1.6)
P 		82
C 96
(3)
P 		65.2
(0.4)
P 		44.9
(-1.4)
P 		25.7
(-3)
M 		45.3
(-1.3)
P 		35.7
(-2.1)
P 		70
avr 83.4
(3) 		67.8
(1.1) 		38.7
(-2.3) 		33.2
(-3) 		50.5
(-0.9) 		38.9
(-2.3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193560_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16598
Sequence Type Exemplar sequence
Representative Public ID W01C8.6 NCBI
Target Description W01C8.6 /REP_DB=WormBase Gene ID /WP=CE28498 /GEN=cat-1 /TR=Q9GNP0 /GB=AAG00026.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=synaptic vesicle amine transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029766(10), NM_001029765(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029766 NCBI Caenorhabditis elegans abnormal CATecholamine distribution family member (cat-1) (cat-1) mRNA, complete cds. 10/11 None
NM_001029765 NCBI Caenorhabditis elegans abnormal CATecholamine distribution family member (cat-1) (cat-1) mRNA, complete cds. 10/11 None
W01C8.6b ENSEMBL cdna:known chromosome:CEL140:X:5705677:5710543:-1 gene:W01C8.6 11/11 None
W01C8.6a ENSEMBL cdna:known chromosome:CEL140:X:5705889:5710543:-1 gene:W01C8.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5705888-5710543(-) 89.63 100.0
Public Domain and Genome References
Ensembl W01C8.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024937 abnormal CATecholamine distribution family member (cat-1) [Caenorhabditis elegans] gb|AAP46273.2| Abnormal catecholamine distribution protein 1, isoform b [Caenorhabditis elegans] 0.0
blast NP_001024936 abnormal CATecholamine distribution family member (cat-1) [Caenorhabditis elegans] gb|AAG00026.4| Abnormal catecholamine distribution protein 1, isoform a [Caenorhabditis elegans] 0.0
blast CAE68789 Hypothetical protein CBG14734 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024937.1 8 122-144,186-208,258-280,295-317,324-346,350-372,379-401,416-435
NP_001024936.1 10 17-39,185-207,214-236,249-271,321-343,358-380,387-409,413-435,442-464,479-498
W01C8.6b 8 122-144,187-209,216-238,258-280,390-412,417-439,446-468,483-502
W01C8.6a 10 17-39,185-207,214-236,249-271,321-343,358-380,387-409,413-435,442-464,479-498
Sequence
Target Sequence 
>C. ELEGANS:193560_S_AT
atctaggtcattcatttgcgcgggaattcaaaaataatttagtcttttctaattctaatg
cgaaatggctctcctctttcattggtcttgtcgtcattggtttcagtcttctgtcgattc
cttctgcaacgtccgtcgccggacttatcatccctcacgctctcctcggattctctatcg
gtatgattgatgcgtcgatgttcccactcatgggctaccttgttgatatccgtcacgtcg
gtgtctacggatcgatctatgccattgccgatgccgccttttgcttcgcctttgcccttg
gaccattcttctccggaccacttgtcaagagtctaggattcccaacgatgatgtacatca
ttgccgtcatcagcttcttatacgcccctctcatgttccttctgaaaaacccccctgttc
taattgagccaaccccccaaacacagtcagtggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTAGGTCATTCATTTGCGCGGGA 311 29 1187 Antisense
TCCTCTTTCATTGGTCTTGTCGTCA 133 593 1258 Antisense
TCGTCATTGGTTTCAGTCTTCTGTC 532 603 1277 Antisense
CTCCTCGGATTCTCTATCGGTATGA 552 231 1348 Antisense
TGATTGATGCGTCGATGTTCCCACT 112 565 1370 Antisense
CATGGGCTACCTTGTTGATATCCGT 467 209 1395 Antisense
TGATATCCGTCACGTCGGTGTCTAC 641 563 1410 Antisense
ACGGATCGATCTATGCCATTGCCGA 124 97 1433 Antisense
CTTCTCCGGACCACTTGTCAAGAGT 519 219 1494 Antisense
TCATTGCCGTCATCAGCTTCTTATA 506 619 1544 Antisense
AACCCCCCAAACACAGTCAGTGGAG 674 95 1617 Antisense
Sequence Source Affymetrix Proprietary Database