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[193558_at] 2',3'-cyclic nucleotide 3'-phosphodiesterase

Description F26A1.14 /REP_DB=WormBase Gene ID /WP=CE02682 /TR=Q19804 /GB=AAA68256.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=2,3prime-cyclic nucleotide 3prime-phosphodiesterase
Cluster 6grp_total > 66      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 42.1
(3)
A 		21.1
(-0.2)
A 		2.3
(-3)
A 		41.2
(2.9)
A 		40
B 27.3
(-1.4)
A 		28.4
(-1.3)
A 		5.8
(-3)
A 		86
(3)
A 		80
C 40.2
(3)
A 		16.7
(-1.5)
A 		8.6
(-3)
A 		18.8
(-1.1)
A 		32
avr 36.5
(1.3) 		22.1
(-0.7) 		5.6
(-3) 		48.7
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 7.3
(-2.1)
A 		2.5
(-2.9)
A 		13.3
(-1.1)
A 		15.8
(-0.6)
A 		2.2
(-3)
A 		36.4
(3)
A 		34
B 2.5
(-2.7)
A 		12
(-1.5)
A 		1.2
(-2.9)
A 		0.5
(-3)
A 		3.7
(-2.6)
A 		47.7
(3)
P 		47
C 2.7
(-2.9)
A 		1.6
(-3)
A 		20.7
(-1)
A 		4.1
(-2.7)
A 		1.9
(-3)
A 		60.1
(3)
P 		59
avr 4.2
(-2.8) 		5.4
(-2.6) 		11.7
(-1.8) 		6.8
(-2.4) 		2.6
(-3) 		48.1
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.3
(3)
A 		4.6
(-1.4)
A 		0.6
(-3)
A 		6
(-0.8)
A 		15
B 8.7
(-0.4)
A 		7
(-1)
A 		1.3
(-3)
A 		18.3
(3)
A 		17
C 13.3
(3)
A 		4.8
(-2)
A 		3
(-3)
A 		3.2
(-2.9)
A 		10
avr 12.4
(3) 		5.5
(-0.8) 		1.6
(-3) 		9.2
(1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.3
(-2.6)
A 		0.9
(-2.9)
A 		2.9
(-1.4)
A 		4
(-0.6)
A 		0.7
(-3)
A 		8.9
(3)
A 		8
B 0.9
(-2.7)
A 		4
(-1.7)
A 		0.3
(-2.9)
A 		0.1
(-3)
A 		1.5
(-2.5)
A 		17.8
(3)
P 		18
C 1
(-2.8)
A 		0.5
(-3)
A 		5.3
(-1.5)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		20.1
(3)
P 		20
avr 1.1
(-2.9) 		1.8
(-2.6) 		2.8
(-2.2) 		1.6
(-2.7) 		0.9
(-3) 		15.6
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6346
Sequence Type Exemplar sequence
Representative Public ID F26A1.14 NCBI
Target Description F26A1.14 /REP_DB=WormBase Gene ID /WP=CE02682 /TR=Q19804 /GB=AAA68256.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=2,3prime-cyclic nucleotide 3prime-phosphodiesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065604 NCBI Caenorhabditis elegans F26A1.14 (F26A1.14) mRNA, complete cds. 11/11 None
SNAP00000001883 ENSEMBL cdna:SNAP chromosome:CEL140:III:4847033:4849811:-1 11/11 None
GENEFINDER00000001888 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4847033:4849811:-1 11/11 None
F26A1.14 ENSEMBL cdna:known chromosome:CEL140:III:4849227:4849811:-1 gene:F26A1.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4849226-4849811(-) 100.0 100.0
Public Domain and Genome References
Gene Title 2',3'-cyclic nucleotide 3'-phosphodiesterase
Ensembl F26A1.14
Entrez Gene 184952 Entrez gene
SwissProt Q19804 EMBL-EBI
WormBase CE02682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498004 F26A1.13 [Caenorhabditis elegans] gb|AAA68255.1| Hypothetical protein F26A1.13 [Caenorhabditis elegans] 0.0
blast CAE71112 Hypothetical protein CBG17965 [Caenorhabditis briggsae] 1.0E-111
blast NP_498005 F26A1.14 [Caenorhabditis elegans] gb|AAA68256.1| Hypothetical protein F26A1.14 [Caenorhabditis elegans] 1.0E-88
blast NP_498005 F26A1.14 [Caenorhabditis elegans] gb|AAA68256.1| Hypothetical protein F26A1.14 [Caenorhabditis elegans] 1.0E-87
blast CAE71112 Hypothetical protein CBG17965 [Caenorhabditis briggsae] 3.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002625 EMBL-EBI Smr protein/MutS2 C-terminal 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:193558_AT
atgtcaccacgaaagcatgaacagtgttttaatttcgatgctgagatatcggatattcaa
aaatgccttgtcgaaggtcatcgcacaattattttaattcgcggagttacgggatccgga
aaatcaacattagctcgagagttggtaaaccattccgaaaacggcgttattgtgaaaaac
gatgtttccaataatataacaagatcagtgcgaaaatttatcgatgaagataaacatctt
atcgttgtagacgaggagaacgtacaacgatcaagtgttaaaaaattcgcagagttagcg
gttaatggccactacgaaattttcgtgttggagccggacacggattggagacacgatgca
attgaatgcaaaaaaagaagcgaaaaagatgaagagatcgggtctatcgagtcgaaaatc
atgcaattaaaagaaaatcaactcggctgggaacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCACCACGAAAGCATGAACAGT 674 47 13 Antisense
AGTGTTTTAATTTCGATGCTGAGAT 692 59 35 Antisense
AATGCCTTGTCGAAGGTCATCGCAC 140 167 74 Antisense
GAAGGTCATCGCACAATTATTTTAA 701 333 85 Antisense
TAATTCGCGGAGTTACGGGATCCGG 605 633 107 Antisense
GGATCCGGAAAATCAACATTAGCTC 252 513 124 Antisense
GTTAGCGGTTAATGGCCACTACGAA 426 439 306 Antisense
GAAATTTTCGTGTTGGAGCCGGACA 491 351 328 Antisense
GCCGGACACGGATTGGAGACACGAT 474 283 345 Antisense
GAAGAGATCGGGTCTATCGAGTCGA 297 339 403 Antisense
GAAAATCAACTCGGCTGGGAACATT 251 353 445 Antisense
Sequence Source Affymetrix Proprietary Database