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[193554_s_at]

Description F11H8.4 /REP_DB=WormBase Gene ID /WP=CE27953 /GEN=cyk-1 /TR=Q19361 /GB=AAA81161.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chicken limb deformity gene; P-rich
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 98      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 93      6grp_total > 96      4grp_total > 04      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 698
1 2 3 4 range
A 349.8
(-1)
P 		230.1
(-2.2)
P 		155.2
(-3)
P 		736.2
(3)
P 		581
B 410.8
(-0.4)
P 		195.2
(-2.5)
P 		146.9
(-3)
P 		753.9
(3)
P 		607
C 301.2
(-1.8)
P 		206.4
(-2.7)
P 		171.3
(-3)
P 		844.7
(3)
P 		673
avr 353.9
(-1.1) 		210.6
(-2.5) 		157.8
(-3) 		778.3
(3) 		621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 493
1 2 3 4 5 6 range
A 316.4
(-1.1)
P 		289.4
(-1.4)
P 		157.9
(-3)
P 		372.6
(-0.4)
P 		593.2
(2.3)
P 		649.2
(3)
P 		491
B 360.7
(-0.8)
P 		270.7
(-2.1)
P 		212.1
(-3)
P 		482.4
(1)
P 		514.1
(1.5)
P 		616.1
(3)
P 		404
C 228.4
(-2.6)
P 		240
(-2.5)
P 		201.3
(-3)
P 		397.9
(-0.4)
P 		544.6
(1.6)
P 		650.5
(3)
P 		449
avr 301.8
(-1.5) 		266.7
(-2) 		190.4
(-3) 		417.6
(0) 		550.6
(1.8) 		638.6
(3) 		448
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 127.3
(3)
P 		50
(-2.3)
P 		40.6
(-3)
P 		107.8
(1.7)
P 		87
B 131
(1.6)
P 		48.2
(-2.3)
P 		34
(-3)
P 		160.7
(3)
P 		127
C 99.7
(-0.1)
P 		59.3
(-3)
P 		59.7
(-3)
P 		142.4
(3)
P 		83
avr 119.3
(1.8) 		52.5
(-2.5) 		44.8
(-3) 		137
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 58.3
(-2)
P 		102.9
(-0.2)
P 		34.4
(-3)
P 		94.5
(-0.5)
P 		179
(3)
P 		158.1
(2.1)
P 		145
B 125.5
(-0.5)
P 		90.1
(-1.7)
P 		51.5
(-3)
P 		127.8
(-0.4)
P 		208.9
(2.3)
P 		229.7
(3)
P 		178
C 84.7
(-1.8)
P 		73.2
(-2.2)
P 		51.2
(-3)
P 		80
(-2)
P 		176.2
(1.5)
P 		217.8
(3)
P 		167
avr 89.5
(-1.3) 		88.7
(-1.3) 		45.7
(-3) 		100.8
(-0.9) 		188
(2.5) 		201.9
(3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193554_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6615
Sequence Type Exemplar sequence
Representative Public ID F11H8.4 NCBI
Target Description F11H8.4 /REP_DB=WormBase Gene ID /WP=CE27953 /GEN=cyk-1 /TR=Q19361 /GB=AAA81161.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chicken limb deformity gene; P-rich
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171880(11), NM_171180(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171880 NCBI Caenorhabditis elegans CYtoKinesis defect family member (cyk-1) (cyk-1) mRNA, complete cds. 11/11 None
NM_171180 NCBI Caenorhabditis elegans CYtoKinesis defect family member (cyk-1) (cyk-1) mRNA, complete cds. 10/11 None
SNAP00000017879 ENSEMBL cdna:SNAP chromosome:CEL140:III:7023767:7029125:-1 11/11 None
GENEFINDER00000017882 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7023767:7029125:-1 11/11 None
F11H8.4b ENSEMBL cdna:known chromosome:CEL140:III:7023571:7029125:-1 gene:F11H8.4 11/11 None
F11H8.4a ENSEMBL cdna:known chromosome:CEL140:III:7023571:7029125:-1 gene:F11H8.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7023773-7029123(-) 100.0 100.0
Public Domain and Genome References
Ensembl F11H8.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS80342 Cytokinesis defect protein 1, isoform a [Caenorhabditis elegans] ref|NP_741210.2| CYtoKinesis defect family member (cyk-1) [Caenorhabditis elegans] 0.0
blast AAS80343 Cytokinesis defect protein 1, isoform b [Caenorhabditis elegans] ref|NP_741211.2| CYtoKinesis defect family member (cyk-1) [Caenorhabditis elegans] 0.0
blast T16038 hypothetical protein F11H8.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010472 EMBL-EBI Diaphanous FH3 1.6E-78
Pfam IPR003104 EMBL-EBI Actin-binding FH2 7.0E-123
Sequence
Target Sequence 
>C. ELEGANS:193554_S_AT
caagaactccggctgcgatgattcgagtttcgactgctgccgataaggctggtgtgctcg
atgagttggagcgtgctacaggaaatgctgatttccttcaaaccttgatgtctgccacaa
attctcgaactcctcgttccggattgccagctcgaactcgcggaggtggaagacttggag
gaggacttgatcggcaaagatcacgacatcagaatgctttgggtcagcttcaagatctca
ctggctgcgcatcggaaccggttctttccggacagtttgctcgatcacgcaacgttcctc
aaaatgatctgcaacgacaaaatatggaacttccatcatcagtaaaaccaacaacggcgc
ttgatagggctaaagcatttggagttggattgccgattggtcagaatgagctcaaagttc
gagtgagaaggaaagggcaaccagctgttccagttacgaatatcaatggaacatcgcaaa
tctcaccaacgcacaaagaaaacgatccgacgggttcctcgtcaacttcatctggtcctg
catcatcaaacacggctacatcatcatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAACTCCGGCTGCGATGATTCG 241 169 3701 Antisense
TTCGAGTTTCGACTGCTGCCGATAA 696 693 3722 Antisense
GATAAGGCTGGTGTGCTCGATGAGT 526 421 3742 Antisense
AATGCTGATTTCCTTCAAACCTTGA 139 159 3784 Antisense
ATGTCTGCCACAAATTCTCGAACTC 229 49 3808 Antisense
CCAGCTCGAACTCGCGGAGGTGGAA 649 271 3847 Antisense
TTCTTTCCGGACAGTTTGCTCGATC 309 659 3962 Antisense
TCGATCACGCAACGTTCCTCAAAAT 391 601 3981 Antisense
GCAACCAGCTGTTCCAGTTACGAAT 264 321 4137 Antisense
TTCATCTGGTCCTGCATCATCAAAC 350 689 4227 Antisense
TCAAACACGGCTACATCATCATCAT 15 629 4246 Antisense
Sequence Source Affymetrix Proprietary Database