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[193551_s_at] Ubiquitin carboxyl-terminal hydrolases family 2

Description C34F6.9 /REP_DB=WormBase Gene ID /WP=CE15678 /TR=O17646 /GB=CAB03946.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ubiquitin carboxyl-terminal hydrolases family 2
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 14      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 15      4grp_total > 46      6grp_highest_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 432.9
(3)
P 		294
(-2)
P 		267.5
(-3)
P 		267.6
(-3)
P 		165
B 455.9
(3)
P 		306.8
(-0.9)
P 		250.5
(-2.3)
P 		224.8
(-3)
P 		231
C 500
(3)
P 		279.8
(-2.5)
P 		261.6
(-3)
P 		323.5
(-1.4)
P 		238
avr 462.9
(3) 		293.5
(-2) 		259.9
(-3) 		272
(-2.6) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 318.1
(3)
P 		263.3
(1.1)
P 		175.2
(-2)
P 		167.3
(-2.3)
P 		217.7
(-0.5)
P 		147.2
(-3)
P 		171
B 315.2
(3)
P 		292
(1.8)
P 		254.1
(-0.1)
P 		214.8
(-2.1)
P 		198.6
(-2.9)
P 		197.4
(-3)
P 		118
C 196.9
(-1.6)
P 		302.2
(3)
P 		228.4
(-0.2)
P 		231.7
(-0.1)
P 		164.6
(-3)
P 		166.3
(-2.9)
P 		138
avr 276.7
(2.5) 		285.8
(3) 		219.2
(-0.5) 		204.6
(-1.2) 		193.6
(-1.8) 		170.3
(-3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 157.6
(3)
P 		63.8
(-1.8)
P 		69.9
(-1.4)
P 		39.2
(-3)
P 		118
B 145.4
(3)
P 		75.8
(-1.3)
P 		58
(-2.4)
P 		47.9
(-3)
P 		98
C 165.5
(3)
P 		80.4
(-1.6)
P 		91.2
(-1)
P 		54.5
(-3)
P 		111
avr 156.2
(3) 		73.3
(-1.6) 		73
(-1.6) 		47.2
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 58.6
(-0.6)
P 		93.6
(3)
P 		38.1
(-2.8)
P 		42.4
(-2.3)
P 		65.7
(0.1)
P 		35.8
(-3)
P 		58
B 109.7
(3)
P 		97.2
(1.6)
P 		61.7
(-2.5)
P 		56.9
(-3)
P 		80.7
(-0.3)
P 		73.6
(-1.1)
P 		53
C 73
(0.5)
P 		92.2
(3)
P 		58.1
(-1.5)
P 		46.6
(-3)
P 		53.3
(-2.1)
P 		55.7
(-1.8)
P 		46
avr 80.4
(1.2) 		94.3
(3) 		52.6
(-2.5) 		48.6
(-3) 		66.6
(-0.6) 		55
(-2.2) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193551_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16563
Sequence Type Exemplar sequence
Representative Public ID C34F6.9 NCBI
Target Description C34F6.9 /REP_DB=WormBase Gene ID /WP=CE15678 /TR=O17646 /GB=CAB03946.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Ubiquitin carboxyl-terminal hydrolases family 2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077475 NCBI Caenorhabditis elegans C34F6.9 (C34F6.9) mRNA, complete cds. 11/11 None
SNAP00000004408 ENSEMBL cdna:SNAP chromosome:CEL140:X:11218400:11222919:-1 11/11 None
GENEFINDER00000004414 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11218400:11222570:-1 11/11 None
C34F6.9 ENSEMBL cdna:known chromosome:CEL140:X:11218066:11222570:-1 gene:C34F6.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11218399-11222570(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ubiquitin carboxyl-terminal hydrolases family 2
Ensembl C34F6.9
Entrez Gene 181312 Entrez gene
SwissProt O17646 EMBL-EBI
WormBase CE15678 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6511 ubiquitin-dependent protein catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4221 ubiquitin thiolesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03946 Hypothetical protein C34F6.9 [Caenorhabditis elegans] ref|NP_509876.1| C34F6.9 [Caenorhabditis elegans] 0.0
blast CAE70679 Hypothetical protein CBG17396 [Caenorhabditis briggsae] 2.0E-65
Sequence
Target Sequence 
>C. ELEGANS:193551_S_AT
ttgcaagcatgtgagcaacgcccccgacaaagcaatatatgtttcgattgatctctcgag
caaaacaaaaggaaccatgcaaagtatggtggacaagatggccaacccaattccagtagt
cggcatgaattgtaaaagttgcggtcaagaaactctatgcagcacaactcgttttacaaa
gcttcccgaagtccttctctattttgtgcctcgtgtcaaagaccaacagcgtggaaagga
tatgactgttctcaacgtccagagacagctcatattaaaagacgataacaatgctcataa
ctatgaactgtgctcatttattgctcattgtggaaaaaacggcgataatggtcattacaa
gtcgtttgaagttgaccgtacaaacgaatttcagtacaacgaatatgacgatgccaaagt
tgtccttgactcaaagttgtccagcgacatcacaatcgttctagcaatgttccggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAAGCATGTGAGCAACGCCCCC 231 703 2982 Antisense
CAACGCCCCCGACAAAGCAATATAT 71 187 2997 Antisense
ATGTTTCGATTGATCTCTCGAGCAA 547 47 3020 Antisense
GGCCAACCCAATTCCAGTAGTCGGC 451 499 3081 Antisense
CTCTATGCAGCACAACTCGTTTTAC 308 231 3134 Antisense
TACAAAGCTTCCCGAAGTCCTTCTC 398 641 3156 Antisense
GTGCCTCGTGTCAAAGACCAACAGC 610 477 3187 Antisense
GGATATGACTGTTCTCAACGTCCAG 279 509 3219 Antisense
GTCCTTGACTCAAAGTTGTCCAGCG 216 477 3403 Antisense
TGTCCAGCGACATCACAATCGTTCT 83 557 3419 Antisense
CAATCGTTCTAGCAATGTTCCGGAA 688 181 3434 Antisense
Sequence Source Affymetrix Proprietary Database