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[193547_at] electron transfer flavoprotein alpha-subunit

Description F27D4.1 /REP_DB=WormBase Gene ID /WP=CE24926 /TR=SW:Q93615 /GB=CAB61027.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=electron transfer flavoprotein alpha-subunit
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 17      4grp_high_8_8 > 62      6grp_highest_nonorm > 25      6grp_total > 41      4grp_total > 58      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3628
1 2 3 4 range
A 3276.3
(-0.3)
P 		4147.9
(1.2)
P 		5247.2
(3)
P 		1619.5
(-3)
P 		3628
B 3270.1
(-0.3)
P 		4375.8
(1.7)
P 		5119
(3)
P 		1733.9
(-3)
P 		3385
C 3125.5
(-0.4)
P 		4264.9
(1.7)
P 		4995.4
(3)
P 		1699.8
(-3)
P 		3296
avr 3224
(-0.3) 		4262.9
(1.5) 		5120.5
(3) 		1684.4
(-3) 		3436

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2437
1 2 3 4 5 6 range
A 5474.8
(3)
P 		4239
(-0.1)
P 		4660.7
(1)
P 		4148
(-0.3)
P 		3318.5
(-2.4)
P 		3069.3
(-3)
P 		2406
B 4354
(0.9)
P 		4271.8
(0.6)
P 		5038.8
(3)
P 		4420.1
(1.1)
P 		3108.9
(-3)
P 		3256.2
(-2.5)
P 		1930
C 4121.4
(-0.1)
P 		4378.2
(0.6)
P 		5251.3
(3)
P 		4854.9
(1.9)
P 		3037.5
(-3)
P 		3380.4
(-2.1)
P 		2214
avr 4650.1
(1.9) 		4296.3
(0.7) 		4983.6
(3) 		4474.3
(1.3) 		3155
(-3) 		3235.3
(-2.7) 		1829
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1504
1 2 3 4 range
A 1192.9
(2.1)
P 		900.4
(0.5)
P 		1371.7
(3)
P 		237.1
(-3)
P 		1135
B 1042.8
(1.9)
P 		1080.7
(2.2)
P 		1186.2
(3)
P 		369.5
(-3)
P 		817
C 1034.6
(0.1)
P 		1226.2
(0.9)
P 		1741.1
(3)
P 		286.6
(-3)
P 		1455
avr 1090.1
(1.2) 		1069.1
(1.1) 		1433
(3) 		297.7
(-3) 		1135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 780
1 2 3 4 5 6 range
A 1009.2
(-0.9)
P 		1507.6
(3)
P 		1015
(-0.9)
P 		1052
(-0.6)
P 		1001.4
(-1)
P 		747.3
(-3)
P 		760
B 1515
(3)
P 		1421.9
(1.4)
P 		1223.6
(-2.1)
P 		1170.7
(-3)
P 		1263.1
(-1.4)
P 		1214.2
(-2.2)
P 		344
C 1527.6
(3)
P 		1335.9
(0.9)
P 		1336.5
(0.9)
P 		976.3
(-3)
P 		982.9
(-2.9)
P 		1131.6
(-1.3)
P 		551
avr 1350.6
(1.9) 		1421.8
(3) 		1191.7
(-0.5) 		1066.3
(-2.5) 		1082.5
(-2.2) 		1031
(-3) 		391
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1200
Sequence Type Exemplar sequence
Representative Public ID F27D4.1 NCBI
Target Description F27D4.1 /REP_DB=WormBase Gene ID /WP=CE24926 /TR=SW:Q93615 /GB=CAB61027.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=electron transfer flavoprotein alpha-subunit
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059745 NCBI Caenorhabditis elegans F27D4.1 (F27D4.1) mRNA, complete cds. 11/11 None
SNAP00000008671 ENSEMBL cdna:SNAP chromosome:CEL140:I:7710746:7712581:1 11/11 None
GENEFINDER00000008680 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7710746:7712581:1 11/11 None
F27D4.1.2 ENSEMBL cdna:known chromosome:CEL140:I:7710551:7712686:1 gene:F27D4.1 11/11 None
F27D4.1.1 ENSEMBL cdna:known chromosome:CEL140:I:7710556:7712701:1 gene:F27D4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7710491-7712512(+) 100.0 100.0
Public Domain and Genome References
Gene Title electron transfer flavoprotein alpha-subunit
Ensembl F27D4.1
Entrez Gene 172535 Entrez gene
WormBase CE24926 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256209_AT electron transfer flavoprotein alpha subunit family protein at
CANINE:1599714_AT similar to Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) cfa
CANINE_2:CFA.15333.1.S1_S_AT similar to Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) cfa
CANINE_2:CFA.20483.1.S1_AT similar to Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) cfa
CANINE_2:CFA.20483.1.S1_S_AT similar to Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) cfa
CANINE_2:CFAAFFX.27790.1.S1_AT similar to Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) cfa
DROSOPHILA_2:1632532_S_AT walrus dm
DROSGENOME1:152276_AT walrus dm
CHICKEN:GGA.12221.1.S1_S_AT electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) gga
CHICKEN:GGA.12221.2.S1_AT electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) gga
CHICKEN:GGA.12221.2.A1_AT Similar to Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) gga
HG-U133A_2:201931_AT electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) hs
HG-U133A:201931_AT electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) hs
HG-U133_PLUS_2:201931_AT electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) hs
HG-FOCUS:201931_AT electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) hs
HUGENEFL:J04058_AT electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) hs
U133_X3P:G4503606_3P_AT electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) hs
HG-U95AV2:40509_AT electron-transfer-flavoprotein, alpha polypeptide (glutaric aciduria II) hs
HG-U95C:52589_AT TYRO3P protein tyrosine kinase pseudogene hs
HU35KSUBC:RC_H78599_AT TYRO3P protein tyrosine kinase pseudogene hs
MG-U74AV2:96112_AT electron transferring flavoprotein, alpha polypeptide mm
MOE430A:1423972_AT electron transferring flavoprotein, alpha polypeptide mm
MOUSE430A_2:1423972_AT electron transferring flavoprotein, alpha polypeptide mm
MOUSE430_2:1423972_AT electron transferring flavoprotein, alpha polypeptide mm
MU19KSUBB:TC29833_AT Electron transferring flavoprotein, alpha polypeptide (Etfa), nuclear gene encoding mitochondrial protein, mRNA mm
RG-U34A:RC_AA894174_G_AT electron transferring flavoprotein, alpha polypeptide rn
RG-U34A:RC_AA894174_AT electron transferring flavoprotein, alpha polypeptide rn
RG-U34C:RC_AI171197_AT electron transferring flavoprotein, alpha polypeptide rn
RAE230A:1371253_AT electron transferring flavoprotein, alpha polypeptide rn
RAT230_2:1371253_AT electron transferring flavoprotein, alpha polypeptide rn
RAE230B:1397319_AT Electron transferring flavoprotein, alpha polypeptide rn
RAT230_2:1397319_AT Electron transferring flavoprotein, alpha polypeptide rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61027 Hypothetical protein F27D4.1 [Caenorhabditis elegans] emb|CAB01967.2| Hypothetical protein F27D4.1 [Caenorhabditis elegans] ref|NP_492146.1| F27D4.1 [Caenorhabditis elegans] sp|Q93615|ETFA_CAEEL Probable electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) 1.0E-178
blast T21451 hypothetical protein F27D4.1 - Caenorhabditis elegans (fragment) pir||D87839 protein F27D4.1 [imported] - Caenorhabditis elegans 1.0E-170
blast CAB61027 Hypothetical protein F27D4.1 [Caenorhabditis elegans] emb|CAB01967.2| Hypothetical protein F27D4.1 [Caenorhabditis elegans] ref|NP_492146.1| F27D4.1 [Caenorhabditis elegans] sp|Q93615|ETFA_CAEEL Probable electron transfer flavoprotein alpha-subunit, mitochondrial precursor (Alpha-ETF) 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR001308 EMBL-EBI Electron transfer flavoprotein, alpha subunit 1.0E-126
Pfam IPR001308 EMBL-EBI Electron transfer flavoprotein, alpha subunit 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193547_AT
gtcgccgctaagcttgacgtatcttcaatctctgacgtcactgaagttcattcggctgac
agtttcactcgcactttgtatgctggtaatgcagttaaaaaagtgaagagcaccgcaccg
atcaagcttctcaccttccgtggaacatcgttcgaaccagcaaaggaaggaggaagcggc
gctgttgaaaatgccccatccgctgatatcaaaaccgacctcagcgaattccttggccaa
gaattgagcaagtctgaacgtcctgatcttgcaactgccaaagtcgtcgtttctggagga
cgtggattgaagagtggagacaatttcaagctcatctatgatcttgctgataagctcgga
gccggagtcggagcatcccgtgccgctgttgatgctggatacgtaccaaatgacatgcaa
gtcggtcagactggaaagattgtagcgccggaactctacattgcaatcggaatttctgga
gccattcaacatttggctggaatgaaggactcaaaggtgattgtcgccatcaacaaggat
cctgatgcaccaattttccaggtcgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCGCTAAGCTTGACGTATCTT 593 475 382 Antisense
GTATCTTCAATCTCTGACGTCACTG 429 453 400 Antisense
CATTCGGCTGACAGTTTCACTCGCA 309 217 430 Antisense
TTCACTCGCACTTTGTATGCTGGTA 499 687 445 Antisense
TCACCTTCCGTGGAACATCGTTCGA 355 625 512 Antisense
GCGGCGCTGTTGAAAATGCCCCATC 612 293 557 Antisense
TCAAAACCGACCTCAGCGAATTCCT 493 627 590 Antisense
AGTCTGAACGTCCTGATCTTGCAAC 179 61 632 Antisense
TGCAACTGCCAAAGTCGTCGTTTCT 603 575 651 Antisense
GTGCCGCTGTTGATGCTGGATACGT 371 477 761 Antisense
ATGCACCAATTTTCCAGGTCGCTGA 61 43 926 Antisense
Sequence Source Affymetrix Proprietary Database