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[193546_at]

Description T05F1.10 /REP_DB=WormBase Gene ID /WP=CE26900 /TR=O18030 /GB=CAB04694.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster 6grp_high1_10_10 > 51      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_total > 51      4grp_total > 59      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 356
(0.6)
P 		550.9
(3)
P 		426.7
(1.5)
P 		63.7
(-3)
P 		487
B 424.3
(1.3)
P 		566.6
(3)
P 		445.6
(1.6)
P 		63.1
(-3)
P 		504
C 466.3
(1.7)
P 		486.3
(2)
P 		554.8
(3)
P 		142.1
(-3)
P 		413
avr 415.5
(1.4) 		534.6
(3) 		475.7
(2.2) 		89.6
(-3) 		445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1209
1 2 3 4 5 6 range
A 394.4
(-1.7)
P 		860.7
(0.6)
P 		1341.7
(3)
P 		1131.8
(2)
P 		568.3
(-0.8)
P 		133.2
(-3)
P 		1209
B 648.8
(-0.5)
P 		780.1
(0.2)
P 		1310.2
(3)
P 		968.1
(1.2)
P 		684.1
(-0.3)
P 		160
(-3)
P 		1150
C 625.4
(-0.2)
P 		819
(0.9)
P 		1182.5
(3)
P 		1150.8
(2.8)
P 		569.8
(-0.5)
P 		135
(-3)
A 		1048
avr 556.2
(-0.8) 		819.9
(0.6) 		1278.1
(3) 		1083.6
(2) 		607.4
(-0.5) 		142.7
(-3) 		1135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 129.6
(3)
P 		119.6
(2.5)
P 		111.5
(2.1)
P 		9.3
(-3)
P 		120
B 135.3
(2.8)
P 		139.9
(3)
P 		103.3
(1.3)
P 		13.5
(-3)
P 		126
C 154.4
(1.6)
P 		139.8
(1.1)
P 		193.4
(3)
P 		24
(-3)
P 		169
avr 139.8
(3) 		133.1
(2.7) 		136.1
(2.8) 		15.6
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 72.7
(-2.1)
P 		306.1
(3)
P 		292.2
(2.7)
P 		287
(2.6)
P 		171.5
(0)
P 		32.4
(-3)
P 		274
B 225.8
(0.9)
P 		259.7
(1.6)
P 		318.2
(3)
P 		256.4
(1.6)
P 		278
(2.1)
P 		59.6
(-3)
P 		259
C 231.8
(1.4)
P 		249.9
(1.8)
P 		301
(3)
P 		231.4
(1.4)
P 		184.4
(0.3)
P 		45.2
(-3)
A 		256
avr 176.8
(0) 		271.9
(2.3) 		303.8
(3) 		258.3
(1.9) 		211.3
(0.8) 		45.7
(-3) 		258
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.332
Sequence Type Exemplar sequence
Representative Public ID T05F1.10 NCBI
Target Description T05F1.10 /REP_DB=WormBase Gene ID /WP=CE26900 /TR=O18030 /GB=CAB04694.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060162
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000020956 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9655808:9657307:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060162 7/11 Cross Hyb Matching Probes A 
SNAP00000020948 7/11 Cross Hyb Matching Probes None
T05F1.10 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9655738-9657238(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04694 Hypothetical protein T05F1.10 [Caenorhabditis elegans] ref|NP_492563.1| DeHydrogenases, Short chain family member (dhs-4) [Caenorhabditis elegans] 1.0E-155
blast CAE60205 Hypothetical protein CBG03768 [Caenorhabditis briggsae] 1.0E-121
blast CAA98524 Hypothetical protein T11F9.11 [Caenorhabditis elegans] ref|NP_505915.1| DeHydrogenases, Short chain family member (dhs-19) [Caenorhabditis elegans] 6.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 5.2E-47
Sequence
Target Sequence 
>C. ELEGANS:193546_AT
gttcaacaatttctgccagcaatgctgaaagacaataatggacatattgtcacaattgct
tcagcagccggtaaaatgggatcttctggtctagctgattactcttctacaaaacacgca
gcagttggatttcacgactcattagttgctgaaataatggaaagtgaaaaaaatggagtg
aagacaacacttgtttgtccgtattacgttcatacttcgatgtttgacgccactggagca
gctaccagaatattttttttccatttctattcatcacagtcaaatctacaaaacaattcc
ttgtttacctcaaagtctgttaaacctatttcatttagattcccttggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAACAATTTCTGCCAGCAATGC 639 443 478 Antisense
GTCACAATTGCTTCAGCAGCCGGTA 383 465 526 Antisense
AAATGGGATCTTCTGGTCTAGCTGA 275 119 551 Antisense
TGGTCTAGCTGATTACTCTTCTACA 58 553 564 Antisense
TACTCTTCTACAAAACACGCAGCAG 692 643 577 Antisense
ACACGCAGCAGTTGGATTTCACGAC 353 109 591 Antisense
GATTTCACGACTCATTAGTTGCTGA 290 429 605 Antisense
GAGCAGCTACCAGAATATTTTTTTT 576 387 713 Antisense
TTTCCATTTCTATTCATCACAGTCA 597 669 735 Antisense
AATTCCTTGTTTACCTCAAAGTCTG 573 175 772 Antisense
TATTTCATTTAGATTCCCTTGGATT 366 661 804 Antisense
Sequence Source Affymetrix Proprietary Database