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[193544_s_at] Yeast hypothetical gene L8167.5 like

Description F45D3.5 /REP_DB=WormBase Gene ID /WP=CE16043 /GEN=sel-1 /TR=Q20423 /GB=CAB01505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical gene L8167.5 like
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 65      6grp_total > 74      4grp_total > 0      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 402
1 2 3 4 range
A 903.4
(0.3)
P 		763.5
(-3)
P 		950.7
(1.4)
P 		1021.1
(3)
P 		258
B 990
(0.2)
P 		782.6
(-3)
P 		1165.6
(3)
P 		1062.4
(1.4)
P 		383
C 995
(0.4)
P 		829.1
(-3)
P 		1123.3
(3)
P 		1108.8
(2.7)
P 		294
avr 962.8
(0.6) 		791.7
(-3) 		1079.9
(3) 		1064.1
(2.7) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 527
1 2 3 4 5 6 range
A 885
(-3)
P 		1065.1
(-0.9)
P 		994
(-1.8)
P 		1411.5
(3)
P 		1070.5
(-0.9)
P 		1054.2
(-1.1)
P 		527
B 935
(-3)
P 		1106.2
(0.7)
P 		1052.5
(-0.4)
P 		1209.2
(3)
P 		1103.2
(0.7)
P 		1199
(2.8)
P 		274
C 963.1
(-3)
P 		995.4
(-2.2)
P 		1210.9
(3)
P 		1178.9
(2.2)
P 		1094.9
(0.2)
P 		1119.9
(0.8)
P 		248
avr 927.7
(-3) 		1055.6
(-0.7) 		1085.8
(-0.2) 		1266.5
(3) 		1089.5
(-0.1) 		1124.4
(0.5) 		339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 328.9
(3)
P 		165.7
(-2.5)
P 		248.5
(0.3)
P 		149.5
(-3)
P 		179
B 315.7
(3)
P 		193.3
(-3)
P 		270.1
(0.8)
P 		226.4
(-1.4)
P 		122
C 329.4
(1.2)
P 		238.4
(-1.5)
P 		391.5
(3)
P 		187
(-3)
P 		205
avr 324.7
(3) 		199.1
(-2.5) 		303.4
(2.1) 		187.6
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 163.1
(-3)
P 		378.8
(3)
P 		216.5
(-1.5)
P 		358
(2.4)
P 		323
(1.4)
P 		256.7
(-0.4)
P 		216
B 325.3
(-0.8)
P 		368.2
(0.5)
P 		255.6
(-3)
P 		320.3
(-1)
P 		448.2
(3)
P 		447.1
(3)
P 		193
C 357
(2.2)
P 		303.7
(-0.1)
P 		308.2
(0.1)
P 		237.1
(-3)
P 		354.3
(2.1)
P 		374.9
(3)
P 		138
avr 281.8
(-1.9) 		350.2
(1.7) 		260.1
(-3) 		305.1
(-0.7) 		375.2
(3) 		359.6
(2.2) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193544_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14134
Sequence Type Exemplar sequence
Representative Public ID F45D3.5 NCBI
Target Description F45D3.5 /REP_DB=WormBase Gene ID /WP=CE16043 /GEN=sel-1 /TR=Q20423 /GB=CAB01505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast hypothetical gene L8167.5 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073743 NCBI Caenorhabditis elegans Suppressor/Enhancer of Lin-12 family member (sel-1) (sel-1) mRNA, complete cds. 11/11 A 
SNAP00000028862 ENSEMBL cdna:SNAP chromosome:CEL140:V:12563321:12565646:1 11/11 None
GENEFINDER00000028867 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12563321:12565646:1 11/11 None
F45D3.5.2 ENSEMBL cdna:known chromosome:CEL140:V:12563313:12565962:1 gene:F45D3.5 11/11 None
F45D3.5.1 ENSEMBL cdna:known chromosome:CEL140:V:12563320:12565976:1 gene:F45D3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12563320-12565646(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical gene L8167.5 like
Gene Symbol sel-1
Ensembl F45D3.5
Entrez Gene 179720 Entrez gene
SwissProt Q20423 EMBL-EBI
WormBase CE16043 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590892_AT similar to sel-1 suppressor of lin-12-like cfa
CANINE:1591524_AT similar to sel-1 suppressor of lin-12-like cfa
CANINE_2:CFA.18769.1.S1_S_AT similar to sel-1 suppressor of lin-12-like cfa
CANINE_2:CFA.5472.1.A1_AT similar to sel-1 suppressor of lin-12-like cfa
CANINE_2:CFAAFFX.26500.1.S1_S_AT similar to sel-1 suppressor of lin-12-like cfa
DROSOPHILA_2:1632236_AT dm
DROSGENOME1:144215_AT dm
CHICKEN:GGA.10455.1.S1_AT sel-1 suppressor of lin-12-like (C. elegans) gga
CHICKEN:GGA.19683.1.S1_AT sel-1 suppressor of lin-12-like (C. elegans) gga
HG-U133A:202064_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:202064_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A_2:202064_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:202062_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A_2:202062_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A:202062_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBA:U11037_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HUGENEFL:U11037_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBA:RC_AA253459_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A:202063_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:202063_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A_2:202063_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:G6518494_3P_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:G6851088_3P_A_AT sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:G4826995_3P_A_AT sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:HS.181300.0.S3_3P_A_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A_2:202061_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-FOCUS:202061_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:202061_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A:202061_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U95AV2:40689_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U95C:65740_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U95E:76761_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBB:RC_R19183_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBD:RC_AA419225_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:HS.98269.0.A1_3P_S_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:230265_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133B:230265_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBC:RC_AA150726_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:HS.181300.1.A1_3P_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
MG-U74AV2:92870_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430A:1453559_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430_2:1453559_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430A_2:1453559_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430A_2:1430692_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430_2:1430692_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430A:1430692_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430A:1425188_S_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430A_2:1425188_S_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430_2:1425188_S_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430A:1425187_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430A_2:1425187_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430_2:1425187_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430B:1436774_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans), mRNA (cDNA clone MGC:25250 IMAGE:4457637) mm
MOUSE430_2:1436774_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans), mRNA (cDNA clone MGC:25250 IMAGE:4457637) mm
MU19KSUBA:TC16150_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans), mRNA (cDNA clone MGC:25250 IMAGE:4457637) mm
MU19KSUBB:TC31599_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans), mRNA (cDNA clone MGC:25250 IMAGE:4457637) mm
RAE230A:1376073_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAT230_2:1376073_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAE230A:1373313_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAT230_2:1373313_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAE230B:1392955_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAT230_2:1392955_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RG-U34A:RC_AA859897_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RG-U34B:RC_AI044821_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RG-U34C:RC_AI070676_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RG-U34C:RC_AI072921_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
Protein Similarities
Method ID Description E-Value
blast CAB01505 Hypothetical protein F45D3.5 [Caenorhabditis elegans] ref|NP_506144.1| Suppressor/Enhancer of Lin-12 family member (sel-1) [Caenorhabditis elegans] gb|AAC47113.1| SEL-1 0.0
blast AAC47112 sel-1 gene product 0.0
blast CAE75512 Hypothetical protein CBG23527 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506144.1 1 656-678
F45D3.5.2 1 656-678
F45D3.5.1 1 656-678
SNAP00000028862 1 656-678
GENEFINDER00000028867 1 657-679
Sequence
Target Sequence 
>C. ELEGANS:193544_S_AT
agaagcgacgtcattgttctcgggaccgaaagataacaatatggaaagagcgttcctcaa
ttggcaaagatctgcaaatcaagaatatgctgctgctcgcgtgaaacttggtgattacta
ctattatggtctcggtacagaagttgaccacagtttggcgttctcaaactataaaatggc
agtcgatagacacggtgttgctcaagcaatgttcaatttgggatatatgcacgaagttgg
cgaaggaatcactcgggatctttacctggctaaacgtttctacgatcaagcaattgagca
tagtcaggatgcatacatgccgtcgaaattagcattagcaaaactagcttttgtcttcta
tttggaagagctcaacaagctgccattaatcagttttatggagaaaaccgttggaccacg
atgggatgctattttgatgaccgtttctgcattggttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCGACGTCATTGTTCTCGGGA 654 71 1572 Antisense
GAGCGTTCCTCAATTGGCAAAGATC 72 387 1619 Antisense
GCTGCTCGCGTGAAACTTGGTGATT 466 297 1663 Antisense
GTTGACCACAGTTTGGCGTTCTCAA 82 439 1714 Antisense
GGCAGTCGATAGACACGGTGTTGCT 77 537 1749 Antisense
AGGAATCACTCGGGATCTTTACCTG 180 55 1815 Antisense
TTACCTGGCTAAACGTTTCTACGAT 179 609 1833 Antisense
GTCAGGATGCATACATGCCGTCGAA 401 465 1874 Antisense
AACTAGCTTTTGTCTTCTATTTGGA 522 139 1913 Antisense
AACCGTTGGACCACGATGGGATGCT 521 143 1977 Antisense
TGATGACCGTTTCTGCATTGGTTCC 6 565 2006 Antisense
Sequence Source Affymetrix Proprietary Database