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[193543_at]

Description K10H10.3 /REP_DB=WormBase Gene ID /WP=CE16253 /TR=O45680 /GB=CAB05779.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster 6grp_total > 68      4grp_total > 03      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 608
1 2 3 4 range
A 175
(-2.1)
M 		85.6
(-3)
A 		95.4
(-2.9)
A 		693.3
(3)
P 		608
B 186.5
(-1.8)
A 		106.6
(-2.8)
M 		92.1
(-3)
A 		583.5
(3)
P 		491
C 173.4
(-2.5)
P 		123.8
(-3)
P 		124.4
(-3)
A 		687
(3)
P 		563
avr 178.3
(-2.2) 		105.3
(-3) 		104
(-3) 		654.6
(3) 		551

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 98
(-0.9)
A 		13.7
(-3)
A 		66.2
(-1.7)
A 		85.4
(-1.2)
A 		59.2
(-1.9)
A 		256.5
(3)
P 		243
B 84.8
(-1.8)
A 		69.5
(-2.3)
A 		79
(-2)
A 		69.9
(-2.3)
A 		49.5
(-3)
A 		230.7
(3)
P 		181
C 109.1
(-0.5)
A 		42
(-2.4)
A 		19
(-3)
A 		18.8
(-3)
A 		46.5
(-2.2)
A 		235.9
(3)
P 		217
avr 97.3
(-1.3) 		41.7
(-3) 		54.7
(-2.6) 		58
(-2.5) 		51.7
(-2.7) 		241
(3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 63.7
(0.3)
M 		18.6
(-3)
A 		24.9
(-2.5)
A 		101.5
(3)
P 		83
B 59.5
(-0.8)
A 		26.3
(-2.7)
M 		21.3
(-3)
A 		124.3
(3)
P 		103
C 57.4
(-1.4)
P 		35.6
(-3)
P 		43.4
(-2.4)
A 		115.8
(3)
P 		80
avr 60.2
(-0.7) 		26.8
(-3) 		29.9
(-2.8) 		113.9
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 18.1
(-1.6)
A 		4.9
(-3)
A 		14.4
(-2)
A 		21.7
(-1.2)
A 		17.9
(-1.6)
A 		62.4
(3)
P 		58
B 29.5
(-2)
A 		23.1
(-2.6)
A 		19.2
(-2.9)
A 		18.5
(-3)
A 		20.1
(-2.9)
A 		86
(3)
P 		68
C 40.4
(-0.1)
A 		12.8
(-2.3)
A 		4.8
(-2.9)
A 		3.8
(-3)
A 		15
(-2.1)
A 		79
(3)
P 		75
avr 29.3
(-1.4) 		13.6
(-2.9) 		12.8
(-3) 		14.7
(-2.8) 		17.7
(-2.5) 		75.8
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193543_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2618
Sequence Type Exemplar sequence
Representative Public ID K10H10.3 NCBI
Target Description K10H10.3 /REP_DB=WormBase Gene ID /WP=CE16253 /TR=O45680 /GB=CAB05779.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Alcohol-other dehydrogenases, short chain type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002361(11), NM_001027079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002361 NCBI Caenorhabditis elegans dhs-8, miscRNA. 11/11 None
NM_001027079 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-8) (dhs-8) mRNA, complete cds. 11/11 None
SNAP00000031896 ENSEMBL cdna:SNAP chromosome:CEL140:II:14498091:14499564:1 11/11 None
GENEFINDER00000031908 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14497917:14499564:1 11/11 None
K10H10.3a ENSEMBL cdna:known chromosome:CEL140:II:14497917:14499577:1 gene:K10H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14497913-14499561(+) 100.0 100.0
Public Domain and Genome References
Ensembl K10H10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05779 Hypothetical protein K10H10.3a [Caenorhabditis elegans] ref|NP_001022250.1| DeHydrogenases, Short chain family member (dhs-8) [Caenorhabditis elegans] 0.0
blast CAB05779 Hypothetical protein K10H10.3a [Caenorhabditis elegans] ref|NP_001022250.1| DeHydrogenases, Short chain family member (dhs-8) [Caenorhabditis elegans] 1.0E-168
blast CAB05784 Hypothetical protein K10H10.6 [Caenorhabditis elegans] ref|NP_497012.1| K10H10.6 [Caenorhabditis elegans] 1.0E-131
blast CAE65936 Hypothetical protein CBG11109 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 5.4E-15
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 5.4E-15
Sequence
Target Sequence 
>C. ELEGANS:193543_AT
tattccgcccagcagctgcaaaaaccaaagatggattcgaatcccattatggtgtcaatg
tagttgctcattttacacttcttcgcatccttctcccggttgttcgtcgctccgctccat
ccagagtagtcttcctctcctcaactttgagttccaaacacggtttcaaaaaatctatgg
ggatttctgaaaagatgagtattctccaaggagaagattcgtcggcgtccacacttcaga
tgtacggagcttcaaagatggcagatatgttgattgcattcaaattgcacagagatgagt
ataaaaatggaattagcacatattccgtgcaccctggaagtggagtcagaactgatattt
tcagaaactccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCCGCCCAGCAGCTGCAAAAAC 224 665 533 Antisense
TGGATTCGAATCCCATTATGGTGTC 513 549 564 Antisense
TTATGGTGTCAATGTAGTTGCTCAT 488 677 579 Antisense
TTCCTCTCCTCAACTTTGAGTTCCA 524 699 664 Antisense
AAGGAGAAGATTCGTCGGCGTCCAC 289 161 740 Antisense
CGGCGTCCACACTTCAGATGTACGG 350 241 755 Antisense
CACTTCAGATGTACGGAGCTTCAAA 504 193 764 Antisense
GAGCTTCAAAGATGGCAGATATGTT 266 389 779 Antisense
ATTAGCACATATTCCGTGCACCCTG 426 13 844 Antisense
CCGTGCACCCTGGAAGTGGAGTCAG 87 265 857 Antisense
GAACTGATATTTTCAGAAACTCCCT 682 347 881 Antisense
Sequence Source Affymetrix Proprietary Database