[Home] | [Total List]

[193541_at] guanine nucleotide-binding protein

Description M04C7.1 /REP_DB=WormBase Gene ID /WP=CE12394 /GEN=gpa-15 /TR=P91907 /GB=CAB05570.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=guanine nucleotide-binding protein
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_high_8_8 > 20      6grp_highest_nonorm > 80      6grp_total > 20      4grp_total > 11      6grp_highest_sub > 02_03      6grp_cgc > 72      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 79.7
(-2.2)
P 		82
(-2.1)
A 		54.9
(-3)
P 		236.6
(3)
P 		182
B 132.8
(0.9)
P 		89.2
(-1.3)
A 		57.4
(-3)
A 		173
(3)
P 		116
C 82.8
(-3)
P 		128.8
(-0.9)
P 		92
(-2.6)
P 		217.2
(3)
P 		134
avr 98.4
(-1.7) 		100
(-1.6) 		68.1
(-3) 		208.9
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 162.6
(-1.1)
P 		181.6
(-0.6)
P 		310.4
(3)
P 		219.2
(0.4)
P 		131.5
(-2)
P 		95.9
(-3)
P 		215
B 148.8
(-2.7)
P 		316
(2.3)
P 		339.4
(3)
P 		207.8
(-0.9)
P 		138
(-3)
P 		145.4
(-2.8)
P 		201
C 108.6
(-3)
P 		370.3
(3)
P 		150.7
(-2)
P 		180.5
(-1.3)
P 		114.9
(-2.8)
P 		106.7
(-3)
P 		264
avr 140
(-2.2) 		289.3
(3) 		266.8
(2.2) 		202.5
(-0) 		128.1
(-2.6) 		116
(-3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 29
(1.3)
P 		17.8
(-2)
A 		14.3
(-3)
P 		34.6
(3)
P 		20
B 42.3
(3)
P 		22
(-1.2)
A 		13.3
(-3)
A 		36.9
(1.9)
P 		29
C 27.4
(-3)
P 		37
(3)
P 		32.1
(-0.1)
P 		36.6
(2.8)
P 		10
avr 32.9
(1.8) 		25.6
(-0.9) 		19.9
(-3) 		36
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 30
(-2.1)
P 		64.6
(2.6)
P 		67.6
(3)
P 		55.6
(1.4)
P 		39.7
(-0.8)
P 		23.4
(-3)
P 		44
B 51.8
(-3)
P 		105.2
(3)
P 		82.4
(0.4)
P 		55
(-2.6)
P 		56
(-2.5)
P 		54.2
(-2.7)
P 		53
C 40.3
(-2.6)
P 		113
(3)
P 		38.4
(-2.8)
P 		36.3
(-3)
P 		37.2
(-2.9)
P 		35.7
(-3)
P 		77
avr 40.7
(-2.7) 		94.3
(3) 		62.8
(-0.3) 		49
(-1.8) 		44.3
(-2.3) 		37.8
(-3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2161
Sequence Type Exemplar sequence
Representative Public ID M04C7.1 NCBI
Target Description M04C7.1 /REP_DB=WormBase Gene ID /WP=CE12394 /GEN=gpa-15 /TR=P91907 /GB=CAB05570.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=guanine nucleotide-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059911(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059911 NCBI Caenorhabditis elegans G Protein, Alpha subunit family member (gpa-15) (gpa-15) mRNA, complete cds. 9/11 None
GENEFINDER00000007300 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8539856:8542618:-1 9/11 None
SNAP00000007285 ENSEMBL cdna:SNAP chromosome:CEL140:I:8539946:8542618:-1 9/11 None
M04C7.1 ENSEMBL cdna:known chromosome:CEL140:I:8539946:8542618:-1 gene:M04C7.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8539876-8542549(-) 97.16 100.0
Public Domain and Genome References
Gene Title guanine nucleotide-binding protein
Gene Symbol gpa-15
Ensembl M04C7.1
Entrez Gene 172645 Entrez gene
WormBase CE28623 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05570 Hypothetical protein M04C7.1 [Caenorhabditis elegans] ref|NP_492312.1| G Protein, Alpha subunit family member (gpa-15) [Caenorhabditis elegans] gb|AAG32090.1| heterotrimeric G protein alpha subunit [Caenorhabditis elegans] sp|P91907|GPA15_CAEEL Guanine nucleotide-binding protein alpha-15 subunit 0.0
blast T23705 hypothetical protein M04C7.1 - Caenorhabditis elegans 0.0
blast AAW02899 gpa-15 [Caenorhabditis briggsae] sp|Q61DE0|GPA15_CAEBR Guanine nucleotide-binding protein alpha-15 subunit emb|CAE67107.1| Hypothetical protein CBG12520 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001019 EMBL-EBI Guanine nucleotide binding protein (G-protein), alpha subunit 1.0E-126
Pfam IPR001019 EMBL-EBI Guanine nucleotide binding protein (G-protein), alpha subunit 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007300 1 362-384
Sequence
Target Sequence 
>C. ELEGANS:193541_AT
gctgattatattccaactgtagatgatatgttacgaatacgaatacctacaatgggagtt
gtacaacaaactattgaaattaaaggaacaaagtttaggtggagtagcgtgaatggaatt
tttaatggccgcccccataacttggatctcgttagaatatacgatgttggaggacaacgc
tcagaacgccgaaaatggattcatctttttgataatgtaaatgcaacaatttttatatca
gcaataaatgagttcaatcaaaaacttaatgaagatggtcaaacgaatcgaatgaaagaa
tcgataaagttattcgaaacaatatgcaattcccgttggtttgtgcaagctgcgatgatt
ttatttttaaacaaacgggatttgtttgaacaaaaattaaagacaacaagtattaatgtg
ctcttttcaacatatcaaggatcaaatgattatgccgagtgtgttgcctatattcagatg
cgttttgaacgacttaataaatattccgacattaagaaaatttatacgcatgtaacgtgt
gcaacagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGATTATATTCCAACTGTAGATG 72 297 511 Antisense
GTTACGAATACGAATACCTACAATG 187 447 540 Antisense
TGAATGGAATTTTTAATGGCCGCCC 338 571 620 Antisense
CCCCCATAACTTGGATCTCGTTAGA 473 259 642 Antisense
GACAACGCTCAGAACGCCGAAAATG 480 365 683 Antisense
GCAATTCCCGTTGGTTTGTGCAAGC 102 323 836 Antisense
GTGCAAGCTGCGATGATTTTATTTT 99 481 853 Antisense
TGTGCTCTTTTCAACATATCAAGGA 416 557 927 Antisense
GATTATGCCGAGTGTGTTGCCTATA 68 431 958 Antisense
GTTGCCTATATTCAGATGCGTTTTG 75 441 973 Antisense
TACGCATGTAACGTGTGCAACAGAC 152 649 1035 Antisense
Sequence Source Affymetrix Proprietary Database