[Home] | [Total List]

[193538_s_at] transcription factor OLF-1 like

Description Y16B4A.1 /REP_DB=WormBase Gene ID /WP=CE19033 /GEN=unc-3 /TR=SW:Q93705 /GB=CAA19442.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=transcription factor OLF-1 like
Cluster 6grp_total > 25      4grp_total > 44      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 148.7
(3)
A 		148.2
(3)
A 		68.7
(-1.5)
A 		41.9
(-3)
A 		107
B 122.4
(-0.1)
A 		201.6
(3)
A 		132.1
(0.3)
A 		48.6
(-3)
A 		153
C 145.3
(0.6)
A 		228.9
(3)
A 		69.4
(-1.7)
A 		23.5
(-3)
A 		205
avr 138.8
(0.9) 		192.9
(3) 		90.1
(-1) 		38
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 132.5
(0.2)
A 		232.2
(3)
A 		87.2
(-1.1)
A 		19.3
(-3)
A 		19.3
(-3)
A 		52.4
(-2.1)
A 		213
B 32.2
(-3)
A 		116.4
(3)
A 		55.1
(-1.4)
A 		61.1
(-0.9)
A 		51.4
(-1.6)
A 		54.2
(-1.4)
A 		84
C 132.9
(3)
A 		46
(-2.3)
A 		89.8
(0.4)
A 		49.5
(-2.1)
A 		58
(-1.6)
A 		34.7
(-3)
A 		98
avr 99.2
(0.8) 		131.5
(3) 		77.4
(-0.7) 		43.3
(-3) 		42.9
(-3) 		47.1
(-2.7) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 54.2
(3)
A 		32.2
(0.3)
A 		18
(-1.5)
A 		6.1
(-3)
A 		48
B 39
(1.4)
A 		49.8
(3)
A 		30.6
(0.1)
A 		10.4
(-3)
A 		39
C 48.1
(1.3)
A 		65.8
(3)
A 		24.2
(-1)
A 		4
(-3)
A 		62
avr 47.1
(2.7) 		49.3
(3) 		24.3
(-0.5) 		6.8
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 24.4
(-1.5)
A 		82.6
(3)
A 		19
(-1.9)
A 		4.9
(-3)
A 		5.8
(-2.9)
A 		12.8
(-2.4)
A 		78
B 11.2
(-3)
A 		38.7
(3)
A 		13.4
(-2.5)
A 		16.2
(-1.9)
A 		20.9
(-0.9)
A 		20.2
(-1)
A 		28
C 49.3
(3)
A 		14
(-2.4)
A 		22.9
(-1)
A 		10
(-3)
A 		18.8
(-1.7)
A 		11.6
(-2.8)
A 		39
avr 28.3
(0.1) 		45.1
(3) 		18.4
(-1.6) 		10.4
(-3) 		15.2
(-2.2) 		14.9
(-2.2) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193538_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17468
Sequence Type Exemplar sequence
Representative Public ID Y16B4A.1 NCBI
Target Description Y16B4A.1 /REP_DB=WormBase Gene ID /WP=CE19033 /GEN=unc-3 /TR=SW:Q93705 /GB=CAA19442.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=transcription factor OLF-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078052 NCBI Caenorhabditis elegans UNCoordinated family member (unc-3) (unc-3) mRNA, complete cds. 11/11 A 
GENEFINDER00000036362 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14776802:14782963:1 11/11 None
SNAP00000036357 ENSEMBL cdna:SNAP chromosome:CEL140:X:14780335:14782963:1 11/11 None
Y16B4A.1 ENSEMBL cdna:known chromosome:CEL140:X:14773456:14783482:1 gene:Y16B4A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14773541-14782963(+) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor OLF-1 like
Gene Symbol unc-3
Ensembl Y16B4A.1
Entrez Gene 181573 Entrez gene
SwissProt Q93705 EMBL-EBI
WormBase CE29366 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589306_AT similar to Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) cfa
CANINE_2:CFA.12330.1.A1_S_AT similar to Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) cfa
CANINE_2:CFAAFFX.26525.1.S1_AT similar to Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) cfa
CANINE_2:CFAAFFX.26531.1.S1_S_AT similar to Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) cfa
DROSOPHILA_2:1639479_A_AT knot dm
DROSGENOME1:143207_AT knot dm
CHICKEN:GGA.276.1.S1_AT early B-cell factor gga
CHICKEN:GGA.276.2.S1_A_AT early B-cell factor gga
U133_X3P:HS.185708.0.S1_3P_AT early B-cell factor hs
HG-U133_PLUS_2:232204_AT early B-cell factor hs
HG-U133B:232204_AT early B-cell factor hs
HG-U95E:78945_AT early B-cell factor hs
HG-U133_PLUS_2:233261_AT Early B-cell factor hs
HG-U133B:233261_AT Early B-cell factor hs
HG-U133_PLUS_2:229487_AT Early B-cell factor hs
HG-U133B:229487_AT Early B-cell factor hs
HU35KSUBA:RC_AA488889_AT Early B-cell factor hs
HU35KSUBD:RC_W73890_AT Early B-cell factor hs
U133_X3P:HS.32425.0.A1_3P_AT Early B-cell factor hs
U133_X3P:HS.293916.0.S1_3P_AT Early B-cell factor hs
U133_X3P:HS.120785.0.A1_3P_AT Early B-cell factor hs
HG-U133_PLUS_2:227646_AT Early B-cell factor hs
HG-U133B:227646_AT Early B-cell factor hs
HG-U95B:57550_AT Early B-cell factor hs
HG-U95C:61699_AT Early B-cell factor hs
HG-U133_PLUS_2:237517_AT Early B-cell factor hs
HG-U133B:237517_AT Early B-cell factor hs
HG-U133_PLUS_2:244876_AT Early B-cell factor hs
HG-U133B:244876_AT Early B-cell factor hs
HG-U95B:51446_AT Early B-cell factor hs
HG-U95C:64233_AT Early B-cell factor hs
HG-U95D:68150_R_AT Early B-cell factor hs
HG-U95D:68222_AT Early B-cell factor hs
HG-U95E:76237_R_AT Early B-cell factor hs
HG-U95E:85034_AT Early B-cell factor hs
HG-U95D:87936_AT Early B-cell factor hs
HU35KSUBD:RC_AA504812_AT Early B-cell factor hs
U133_X3P:HS.191950.0.A1_3P_AT Early B-cell factor hs
U133_X3P:HS.31846.0.A1_3P_AT Early B-cell factor hs
MG-U74AV2:92535_AT early B-cell factor 1 mm
MOUSE430_2:1457441_AT early B-cell factor 1 mm
MOE430B:1457441_AT early B-cell factor 1 mm
MU11KSUBA:L12147_S_AT early B-cell factor 1 mm
MG-U74BV2:115110_AT early B-cell factor 1 mm
MG-U74CV2:171204_AT early B-cell factor 1 mm
MOE430A:1448293_AT early B-cell factor 1 mm
MOUSE430A_2:1448293_AT early B-cell factor 1 mm
MOUSE430_2:1448293_AT early B-cell factor 1 mm
MOE430A:1416301_A_AT early B-cell factor 1 mm
MOUSE430A_2:1416301_A_AT early B-cell factor 1 mm
MOUSE430_2:1416301_A_AT early B-cell factor 1 mm
MOE430A:1416302_AT early B-cell factor 1 mm
MOUSE430A_2:1416302_AT early B-cell factor 1 mm
MOUSE430_2:1416302_AT early B-cell factor 1 mm
MU19KSUBC:TC37911_AT early B-cell factor 1 mm
MOE430B:1439820_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1439820_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOE430B:1441627_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1441627_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOE430B:1459348_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1459348_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOE430B:1439644_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1439644_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOE430B:1446669_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1446669_AT Early B-cell factor 1 (Ebf1), mRNA mm
MU19KSUBA:TC16216_AT Early B-cell factor 1 (Ebf1), mRNA mm
MU19KSUBA:TC17636_AT Early B-cell factor 1 (Ebf1), mRNA mm
MU19KSUBA:TC20663_AT Early B-cell factor 1 (Ebf1), mRNA mm
MU19KSUBA:TC23171_AT Early B-cell factor 1 (Ebf1), mRNA mm
RG-U34A:L24051_AT early B-cell factor 1 rn
RAE230A:1368949_AT early B-cell factor 1 rn
RAT230_2:1368949_AT early B-cell factor 1 rn
RAE230B:1379474_AT Early B-cell factor 1 rn
RAT230_2:1379474_AT Early B-cell factor 1 rn
RAE230B:1392117_AT Early B-cell factor 1 rn
RAT230_2:1392117_AT Early B-cell factor 1 rn
RAE230B:1394709_AT Early B-cell factor 1 rn
RAT230_2:1394709_AT Early B-cell factor 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03092 Hypothetical protein Y16B4A.1 [Caenorhabditis elegans] emb|CAA19442.2| Hypothetical protein Y16B4A.1 [Caenorhabditis elegans] ref|NP_510453.1| UNCoordinated family member (unc-3) [Caenorhabditis elegans] sp|Q93705|UNC3_CAEEL Transcription factor unc-3 (CEO/E) gb|AAC06226.1| Olf-1/EBF transcription factor [Caenorhabditis elegans] 0.0
blast T22089 hypothetical protein Y16B4A.1 - Caenorhabditis elegans 0.0
blast CAE63229 Hypothetical protein CBG07590 [Caenorhabditis briggsae] 0.0
blast CAB03092 Hypothetical protein Y16B4A.1 [Caenorhabditis elegans] emb|CAA19442.2| Hypothetical protein Y16B4A.1 [Caenorhabditis elegans] ref|NP_510453.1| UNCoordinated family member (unc-3) [Caenorhabditis elegans] sp|Q93705|UNC3_CAEEL Transcription factor unc-3 (CEO/E) gb|AAC06226.1| Olf-1/EBF transcription factor [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 4.4E-18
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 4.4E-18
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 4.4E-18
Sequence
Target Sequence 
>C. ELEGANS:193538_S_AT
gagagtcagtccaacttatttcgccacatgcgatacgtgtgaccaccccgccaaaacact
ctgccggacctgtggacgtcactctgcaatacaaatccaagacttatagtagaggaaccc
cacttcgcttttcttatatcactctagccgaaccaggcatcgagtacgggttccaacgtc
tacagaagcttctcccaaagtatccaggtgacccggagcgtcttccaaaggatcaaatcc
tcaaaagagcagccgaacttgccgaggcgttgtacaacaggttattgaatttgaagccat
cggtaattttgacactcatcatttttagaacatctacggaatcgctgagctcctattatc
acactcagtttgacgctacttctgactatgctgcacgcactcacacatctcccagatcca
ctcttccctatggagctggaccacctgcactttcttctgcagtctaccaaacgtcctatc
cgacagtcaatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTCAGTCCAACTTATTTCGCC 273 395 908 Antisense
CCTGTGGACGTCACTCTGCAATACA 44 267 976 Antisense
TATAGTAGAGGAACCCCACTTCGCT 319 647 1012 Antisense
CTTCGCTTTTCTTATATCACTCTAG 640 219 1030 Antisense
TCACTCTAGCCGAACCAGGCATCGA 414 627 1046 Antisense
GAGTACGGGTTCCAACGTCTACAGA 315 397 1069 Antisense
TTCTCCCAAAGTATCCAGGTGACCC 427 567 1097 Antisense
CAGCCGAACTTGCCGAGGCGTTGTA 38 203 1157 Antisense
GGAATCGCTGAGCTCCTATTATCAC 46 533 1245 Antisense
GTTTGACGCTACTTCTGACTATGCT 585 451 1275 Antisense
AACGTCCTATCCGACAGTCAATGCA 184 143 1377 Antisense
Sequence Source Affymetrix Proprietary Database