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[193535_s_at] guanine-nucleotide releasing factor of the CDC24 family

Description C02F12.4 /REP_DB=WormBase Gene ID /WP=CE03899 /GB=AAK39134.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=guanine-nucleotide releasing factor of the CDC24 family
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 29      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 81      6grp_total > 28      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 485.7
(3)
P 		384
(-0.2)
P 		293.7
(-3)
P 		396.1
(0.2)
P 		192
B 648.3
(3)
P 		307.5
(-3)
P 		315.4
(-2.9)
P 		313.2
(-2.9)
P 		341
C 419.2
(3)
P 		291.2
(-2.8)
P 		285.7
(-3)
P 		349.1
(-0.2)
P 		134
avr 517.7
(3) 		327.6
(-2.2) 		298.3
(-3) 		352.8
(-1.5) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 335.9
(3)
P 		263.2
(0.2)
P 		193.6
(-2.4)
P 		179
(-3)
P 		245
(-0.5)
P 		267.9
(0.4)
P 		157
B 277.6
(3)
P 		270.5
(2.6)
P 		262.3
(2.1)
P 		177.7
(-3)
P 		241.6
(0.8)
P 		221
(-0.4)
P 		100
C 309.7
(3)
P 		244.9
(-1.1)
P 		281
(1.2)
P 		215.5
(-3)
P 		256.6
(-0.4)
P 		248.1
(-0.9)
P 		94
avr 307.7
(3) 		259.5
(0.5) 		245.6
(-0.2) 		190.7
(-3) 		247.7
(-0.1) 		245.7
(-0.2) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 176.8
(3)
P 		83.4
(-1.7)
P 		76.8
(-2.1)
P 		58
(-3)
P 		119
B 206.7
(3)
P 		75.9
(-2.6)
P 		73.1
(-2.7)
P 		66.7
(-3)
P 		140
C 138.8
(3)
P 		83.7
(-1.1)
P 		99.6
(0.1)
P 		58.9
(-3)
P 		80
avr 174.1
(3) 		81
(-1.9) 		83.2
(-1.8) 		61.2
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 61.9
(-0.7)
P 		93.6
(3)
P 		42.2
(-3)
P 		45.4
(-2.6)
P 		73.9
(0.7)
P 		65.2
(-0.3)
P 		51
B 96.6
(2.8)
P 		90
(2)
P 		63.7
(-1.1)
P 		47.1
(-3)
P 		98.2
(3)
P 		82.4
(1.1)
P 		51
C 114.8
(3)
P 		74.7
(-0.4)
P 		71.5
(-0.6)
P 		43.3
(-3)
P 		83
(0.3)
P 		83.1
(0.3)
P 		72
avr 91.1
(3) 		86.1
(2.3) 		59.1
(-1.2) 		45.3
(-3) 		85
(2.2) 		76.9
(1.1) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193535_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18437
Sequence Type Exemplar sequence
Representative Public ID C02F12.4 NCBI
Target Description C02F12.4 /REP_DB=WormBase Gene ID /WP=CE03899 /GB=AAK39134.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=guanine-nucleotide releasing factor of the CDC24 family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076232 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-52) (tag-52) mRNA, complete cds. 11/11 None
C02F12.4 ENSEMBL cdna:known chromosome:CEL140:X:3674037:3678542:-1 gene:C02F12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032660 3/11 Cross Hyb Matching Probes None
GENEFINDER00000032672 3/11 Cross Hyb Matching Probes None
GENEFINDER00000032669 8/11 Cross Hyb Matching Probes None
SNAP00000032661 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3674238-3678542(-) 100.0 100.0
Public Domain and Genome References
Gene Title guanine-nucleotide releasing factor of the CDC24 family
Gene Symbol tag-52
Ensembl C02F12.4
Entrez Gene 180657 Entrez gene
SwissProt Q11100 EMBL-EBI
WormBase CE03899 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39134 Temporarily assigned gene name protein 52 [Caenorhabditis elegans] ref|NP_508633.1| Temporarily Assigned Gene name family member (tag-52) [Caenorhabditis elegans] sp|Q11100|YL14_CAEEL Hypothetical protein C02F12.4 in chromosome X 0.0
blast CAE68466 Hypothetical protein CBG14260 [Caenorhabditis briggsae] 0.0
blast XP_624131 PREDICTED: similar to CG8606-PA, isoform A [Apis mellifera] 5.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR000219 EMBL-EBI DH domain 2.2E-19
Sequence
Target Sequence 
>C. ELEGANS:193535_S_AT
gagaacactccatcaggcgttggttggacagcctccccaagaagttcgtcttttcgaaaa
cgtagagcgtctactctgagaaataaaaatgcagatgtaactgacggcaacaactacctc
agccatcttgttctcaatgatgtcaccatgacacaaccgtacactggtcttaatgctttt
gtgggaactccaaagtcgagaacaccaactgatgacgattacgacagtgatcgggactat
gtttggactgatgacgaggagtttgtttcggacgacaagaagattccaatcagacgtgtg
gctagttatgatgaagaggatcgccgcccacgcgatttcagcgaggttcgtcgctctgtg
gcttcggaaccaccacgtcgccatcttgcagtggacgacattcgcaagttgagctaccaa
cagcgttctctggagccattcaacatggtcactgaggacgatgatgaggacgacatcatt
gatatcaaagtcaaaggagagcgtccacgtccgtggtgggagaccgaatcagcaccaccg
gctattaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACACTCCATCAGGCGTTGGTT 92 393 1408 Antisense
CAACAACTACCTCAGCCATCTTGTT 317 189 1515 Antisense
GACACAACCGTACACTGGTCTTAAT 635 361 1557 Antisense
GTCTTAATGCTTTTGTGGGAACTCC 294 467 1574 Antisense
GAACACCAACTGATGACGATTACGA 65 351 1607 Antisense
CGCCCACGCGATTTCAGCGAGGTTC 286 257 1732 Antisense
CACGTCGCCATCTTGCAGTGGACGA 109 199 1781 Antisense
GACGACATTCGCAAGTTGAGCTACC 318 379 1801 Antisense
AGTCAAAGGAGAGCGTCCACGTCCG 162 61 1896 Antisense
CACGTCCGTGGTGGGAGACCGAATC 221 89 1913 Antisense
CGAATCAGCACCACCGGCTATTAAA 363 253 1932 Antisense
Sequence Source Affymetrix Proprietary Database