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[193529_at] glycerophosphoryldiester phophodiesterase like

Description F55C5.2 /REP_DB=WormBase Gene ID /WP=CE11152 /TR=Q20816 /GB=CAB01567.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glycerophosphoryldiester phophodiesterase like
Cluster 6grp_high1_10_10 > 79      6grp_total > 79      4grp_total > 15      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 44.4
(3)
P 		7.5
(-2.4)
A 		11.2
(-1.9)
A 		3.6
(-3)
A 		41
B 17.7
(-1)
A 		6.9
(-3)
A 		23.4
(0)
A 		39.4
(3)
A 		33
C 42.1
(1)
P 		6.8
(-2.5)
A 		2.2
(-3)
A 		62.8
(3)
P 		61
avr 34.7
(2.9) 		7.1
(-3) 		12.3
(-1.9) 		35.3
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 69.2
(-2.1)
P 		97.7
(-0.6)
P 		52.5
(-3)
P 		63.4
(-2.4)
P 		89.4
(-1)
P 		163.6
(3)
P 		111
B 45.4
(-1.5)
P 		89.6
(0.6)
P 		11.7
(-3)
A 		38.8
(-1.8)
A 		104.2
(1.2)
P 		142.6
(3)
P 		131
C 66.1
(-1.1)
P 		89.3
(0)
P 		26.3
(-3)
A 		52
(-1.8)
P 		108.8
(1)
P 		151.2
(3)
P 		125
avr 60.2
(-1.5) 		92.2
(0) 		30.2
(-3) 		51.4
(-2) 		100.8
(0.5) 		152.5
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.2
(3)
P 		1.6
(-2.6)
A 		2.9
(-2.1)
A 		0.5
(-3)
A 		16
B 5.6
(0.5)
A 		1.7
(-3)
A 		5.4
(0.3)
A 		8.4
(3)
A 		7
C 13.9
(3)
P 		2
(-2.5)
A 		0.8
(-3)
A 		10.6
(1.5)
P 		13
avr 11.9
(3) 		1.8
(-3) 		3
(-2.3) 		6.5
(-0.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 12.8
(-2.7)
P 		34.7
(1.9)
P 		11.4
(-3)
P 		16.1
(-2)
P 		27
(0.3)
P 		39.8
(3)
P 		28
B 15.8
(-1.5)
P 		29.8
(0.2)
P 		2.8
(-3)
A 		10.3
(-2.1)
A 		42.3
(1.7)
P 		53.2
(3)
P 		50
C 24.5
(-0.6)
P 		27.2
(-0.2)
P 		6.7
(-3)
A 		10.5
(-2.5)
P 		35.2
(0.9)
P 		50.6
(3)
P 		44
avr 17.7
(-1.4) 		30.6
(0.5) 		7
(-3) 		12.3
(-2.2) 		34.8
(1.1) 		47.9
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13921
Sequence Type Exemplar sequence
Representative Public ID F55C5.2 NCBI
Target Description F55C5.2 /REP_DB=WormBase Gene ID /WP=CE11152 /TR=Q20816 /GB=CAB01567.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=glycerophosphoryldiester phophodiesterase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073676 NCBI Caenorhabditis elegans F55C5.2 (F55C5.2) mRNA, complete cds. 11/11 None
SNAP00000005342 ENSEMBL cdna:SNAP chromosome:CEL140:V:12266943:12268080:1 11/11 None
GENEFINDER00000005358 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12266984:12268281:1 11/11 None
F55C5.2 ENSEMBL cdna:known chromosome:CEL140:V:12266984:12268080:1 gene:F55C5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12266983-12268080(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycerophosphoryldiester phophodiesterase like
Ensembl F55C5.2
Entrez Gene 186285 Entrez gene
SwissProt Q20816 EMBL-EBI
WormBase CE11152 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6071 glycerol metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8889 glycerophosphodiester phosphodiesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01567 Hypothetical protein F55C5.2 [Caenorhabditis elegans] ref|NP_506077.1| F55C5.2 [Caenorhabditis elegans] 1.0E-171
blast CAB01567 Hypothetical protein F55C5.2 [Caenorhabditis elegans] ref|NP_506077.1| F55C5.2 [Caenorhabditis elegans] 1.0E-167
blast CAB01567 Hypothetical protein F55C5.2 [Caenorhabditis elegans] ref|NP_506077.1| F55C5.2 [Caenorhabditis elegans] 1.0E-157
blast CAE75433 Hypothetical protein CBG23426 [Caenorhabditis briggsae] 1.0E-100
blast CAE75433 Hypothetical protein CBG23426 [Caenorhabditis briggsae] 1.0E-91
blast CAE75433 Hypothetical protein CBG23426 [Caenorhabditis briggsae] 1.0E-89
blast AAD14735 Hypothetical protein T12B3.3 [Caenorhabditis elegans] ref|NP_501176.1| T12B3.3 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 3.8E-74
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 3.8E-74
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 3.8E-74
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000005342 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:193529_AT
aatgcaaaaattccacgactcaatgaagcaatcgatttttgtgtggagaatggactgaag
atgttatttgatatgaaaaatgataacttgaagcttatggaagcagtttctgaagaaatc
aaaaaacgaaatctatatgatcaggtcatggttagcagtttcaatccaattgtcccgtgg
aggctaaagaaaattgatccaaaaattatcactggaatcactgtcgatagatcttattat
tcatacagcgatgatcacagaaaaagtccattctccacaagtttctttgctcatttttgg
aatgaaattcttgatgagattaatatgattattcaaccactctatattttacccagattt
ctaggagttgatgtggttatgatcagttttcaactgatttcagaaaacgccgttcgggaa
tcaaacgaaaaaggattttcagtcatttcgtggacagtaaatgatgaagattacatgaga
attcttacaaaactcaatgttccattcttgacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCAAAAATTCCACGACTCAATG 110 165 346 Antisense
GATCAGGTCATGGTTAGCAGTTTCA 22 421 484 Antisense
GCAGTTTCAATCCAATTGTCCCGTG 86 313 500 Antisense
ATCACTGGAATCACTGTCGATAGAT 176 29 553 Antisense
AAAAGTCCATTCTCCACAAGTTTCT 182 133 607 Antisense
CACAAGTTTCTTTGCTCATTTTTGG 185 195 621 Antisense
ATTCAACCACTCTATATTTTACCCA 99 13 676 Antisense
ATTTTACCCAGATTTCTAGGAGTTG 620 13 691 Antisense
CTGATTTCAGAAAACGCCGTTCGGG 277 237 739 Antisense
AAAGGATTTTCAGTCATTTCGTGGA 173 121 775 Antisense
AACTCAATGTTCCATTCTTGACGGA 620 135 836 Antisense
Sequence Source Affymetrix Proprietary Database