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[193528_s_at]

Description W09H1.1 /REP_DB=WormBase Gene ID /WP=CE20174 /TR=Q9XUJ0 /GB=CAB04961.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Dual specificity phosphatase, catalytic domain
Cluster 6grp_total > 25      4grp_total > 23      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 94.9
(3)
A 		6.5
(-2.9)
A 		5
(-3)
A 		45.9
(-0.3)
A 		90
B 57.7
(3)
A 		8.9
(-2.5)
A 		4.3
(-3)
A 		54.6
(2.7)
A 		53
C 89.6
(3)
A 		15.9
(-2.2)
A 		4.1
(-3)
A 		61.9
(1.1)
A 		86
avr 80.7
(3) 		10.4
(-2.5) 		4.5
(-3) 		54.1
(0.9) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 57
(0)
A 		107.3
(3)
A 		18.8
(-2.2)
A 		5.8
(-3)
A 		13
(-2.6)
A 		30.6
(-1.5)
A 		102
B 85.1
(3)
A 		40.1
(-0.6)
A 		14.3
(-2.6)
A 		9.1
(-3)
A 		9.8
(-2.9)
A 		10.8
(-2.9)
A 		76
C 66.2
(3)
A 		28.9
(-0.6)
A 		42
(0.7)
A 		4.2
(-3)
A 		5.7
(-2.9)
A 		5.1
(-2.9)
A 		62
avr 69.4
(3) 		58.8
(2) 		25
(-1.2) 		6.4
(-3) 		9.5
(-2.7) 		15.5
(-2.1) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 34.5
(3)
A 		1.4
(-3)
A 		1.3
(-3)
A 		6.7
(-2)
A 		33
B 18.4
(3)
A 		2.2
(-2.6)
A 		1
(-3)
A 		11.6
(0.7)
A 		17
C 29.7
(3)
A 		4.6
(-2.3)
A 		1.4
(-3)
A 		10.4
(-1.1)
A 		28
avr 27.5
(3) 		2.7
(-2.7) 		1.2
(-3) 		9.6
(-1.1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 10.5
(-1.5)
A 		38.2
(3)
A 		4.1
(-2.6)
A 		1.5
(-3)
A 		3.9
(-2.6)
A 		7.5
(-2)
A 		37
B 29.6
(3)
A 		13.3
(-0.6)
A 		3.5
(-2.8)
A 		2.4
(-3)
A 		4
(-2.6)
A 		4
(-2.6)
A 		27
C 24.5
(3)
A 		8.8
(-1)
A 		10.7
(-0.5)
A 		0.8
(-3)
A 		1.8
(-2.7)
A 		1.7
(-2.8)
A 		24
avr 21.5
(3) 		20.1
(2.6) 		6.1
(-1.6) 		1.6
(-3) 		3.2
(-2.5) 		4.4
(-2.2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193528_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3244
Sequence Type Exemplar sequence
Representative Public ID W09H1.1 NCBI
Target Description W09H1.1 /REP_DB=WormBase Gene ID /WP=CE20174 /TR=Q9XUJ0 /GB=CAB04961.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Dual specificity phosphatase, catalytic domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027232(11), NM_001027231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027232 NCBI Caenorhabditis elegans W09H1.1b (W09H1.1) mRNA, complete cds. 11/11 None
NM_001027231 NCBI Caenorhabditis elegans W09H1.1a (W09H1.1) mRNA, complete cds. 11/11 None
SNAP00000010983 ENSEMBL cdna:SNAP chromosome:CEL140:II:13174385:13181426:-1 9/11 None
GENEFINDER00000010994 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13175916:13182726:-1 11/11 None
W09H1.1b ENSEMBL cdna:known chromosome:CEL140:II:13175825:13181426:-1 gene:W09H1.1 11/11 None
W09H1.1a ENSEMBL cdna:known chromosome:CEL140:II:13175916:13181457:-1 gene:W09H1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13175912-13181423(-) 100.0 100.0
Public Domain and Genome References
Ensembl W09H1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE46685 Hypothetical protein W09H1.1b [Caenorhabditis elegans] ref|NP_001022403.1| W09H1.1b [Caenorhabditis elegans] 0.0
blast CAB04961 Hypothetical protein W09H1.1a [Caenorhabditis elegans] ref|NP_001022402.1| W09H1.1a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:193528_S_AT
ttcgcgtcagcgattgatgcagtcaacaataattccctaatgtgcagactaaatattgag
tttatttgtgaaattgctgatgagacagcggatcacgtgcaggaggctagacgccaaaac
cgtggcttcgaatgtccatgcttttgcaaccgttcgagcagtcacttccgctactacctc
tcatatagcttgccggaaactgagcagagatgcatgatggtacagaatttgaataataag
cttactgaagacacaaagttgaatgatatgttcgacggatttctcgatttggtgcaacgt
gctcgtcgtgcaaagcgaaatgtgctagtttgcagtacaaggggcagaaatcgcgcccca
gcattcgcctcggcatatctcatgagcaaggagcagattccacgtcaggcagctgtggca
aaagttcgcacagctatgggtacgatgcgaccaccggtgaacatttcggactttatgcaa
agaaaattgatgagatatcagcaacatctgggaattgacctctccaatgcgtatgaccca
actcatactcttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCGTCAGCGATTGATGCAGTCA 614 697 637 Antisense
AGACAGCGGATCACGTGCAGGAGGC 697 71 719 Antisense
AACCGTGGCTTCGAATGTCCATGCT 432 147 754 Antisense
GCTTTTGCAACCGTTCGAGCAGTCA 626 303 776 Antisense
CTACTACCTCTCATATAGCTTGCCG 292 227 807 Antisense
TCGATTTGGTGCAACGTGCTCGTCG 655 601 920 Antisense
TCGCCTCGGCATATCTCATGAGCAA 524 599 1001 Antisense
GATTCCACGTCAGGCAGCTGTGGCA 639 433 1032 Antisense
GATGCGACCACCGGTGAACATTTCG 601 411 1080 Antisense
GAATTGACCTCTCCAATGCGTATGA 315 323 1148 Antisense
GTATGACCCAACTCATACTCTTCCA 103 455 1167 Antisense
Sequence Source Affymetrix Proprietary Database