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[193525_s_at]

Description F47A4.3 /REP_DB=WormBase Gene ID /WP=CE16059 /TR=Q20498 /GB=CAA90063.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=breakpoint cluster region (BCR) protein domain
Cluster 6grp_total > 22      4grp_total > 50      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 201.5
(-1.3)
P 		312.5
(3)
P 		285.4
(2)
P 		155.9
(-3)
A 		157
B 202.5
(-0.1)
P 		295.4
(3)
P 		232.4
(0.9)
P 		118.1
(-3)
A 		177
C 188.7
(-2.6)
P 		289.4
(3)
P 		248.9
(0.7)
P 		181.6
(-3)
A 		108
avr 197.6
(-1.1) 		299.1
(3) 		255.6
(1.2) 		151.9
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 242.9
(1.1)
P 		297.9
(3)
P 		270.6
(2.1)
P 		210.8
(0)
P 		146.7
(-2.2)
A 		122.8
(-3)
A 		175
B 286.8
(1.8)
P 		330.5
(3)
P 		270.7
(1.3)
P 		179.9
(-1.3)
P 		183.5
(-1.2)
A 		120.2
(-3)
A 		210
C 290.3
(1.2)
P 		328
(2.2)
P 		311.9
(1.8)
P 		356.2
(3)
P 		149.9
(-2.7)
A 		137.6
(-3)
A 		219
avr 273.3
(1.6) 		318.8
(3) 		284.4
(1.9) 		249
(0.8) 		160
(-2) 		126.9
(-3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 73.4
(2.9)
P 		67.8
(2.2)
P 		74.6
(3)
P 		22.8
(-3)
A 		52
B 64.6
(1.9)
P 		73
(3)
P 		53.8
(0.6)
P 		25.2
(-3)
A 		48
C 62.5
(0.4)
P 		83.2
(2.6)
P 		86.7
(3)
P 		30.6
(-3)
A 		56
avr 66.8
(2) 		74.7
(3) 		71.7
(2.6) 		26.2
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 44.8
(-1.8)
P 		106
(3)
P 		58.9
(-0.7)
P 		53.5
(-1.1)
P 		44.3
(-1.9)
A 		29.9
(-3)
A 		76
B 99.8
(2.1)
P 		110
(3)
P 		65.7
(-1.1)
P 		47.6
(-2.7)
P 		74.5
(-0.3)
A 		44.8
(-3)
A 		65
C 107.6
(3)
P 		100.1
(2.3)
P 		79.4
(0.2)
P 		71.6
(-0.5)
P 		48.5
(-2.8)
A 		46.1
(-3)
A 		62
avr 84.1
(1) 		105.4
(3) 		68
(-0.4) 		57.6
(-1.4) 		55.8
(-1.6) 		40.3
(-3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193525_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16016
Sequence Type Exemplar sequence
Representative Public ID F47A4.3 NCBI
Target Description F47A4.3 /REP_DB=WormBase Gene ID /WP=CE16059 /TR=Q20498 /GB=CAA90063.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=breakpoint cluster region (BCR) protein domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029512(11), NM_001029513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029512 NCBI Caenorhabditis elegans F47A4.3a (F47A4.3) mRNA, complete cds. 11/11 None
NM_001029513 NCBI Caenorhabditis elegans F47A4.3b (F47A4.3) mRNA, complete cds. 11/11 None
GENEFINDER00000039710 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9810400:9829773:-1 9/11 None
SNAP00000039707 ENSEMBL cdna:SNAP chromosome:CEL140:X:9823895:9830085:-1 11/11 None
F47A4.3a ENSEMBL cdna:known chromosome:CEL140:X:9823712:9831180:-1 gene:F47A4.3 11/11 None
F47A4.3b ENSEMBL cdna:known chromosome:CEL140:X:9823895:9830234:-1 gene:F47A4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9823894-9831141(-) 100.0 100.0
Public Domain and Genome References
Ensembl F47A4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90063 Hypothetical protein F47A4.3a [Caenorhabditis elegans] ref|NP_001024683.1| F47A4.3a [Caenorhabditis elegans] 0.0
blast CAH60776 Hypothetical protein F47A4.3b [Caenorhabditis elegans] ref|NP_001024684.1| F47A4.3b [Caenorhabditis elegans] 0.0
blast CAE58716 Hypothetical protein CBG01901 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-62
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-62
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-62
Sequence
Target Sequence 
>C. ELEGANS:193525_S_AT
gaggtcacattcaacagacgcagcattccaatcatcaaggacagattcatttattcaact
gatgcacactggaatggatcaaattcgggaagggatgcgaattttcagagcaagagcacg
aagtatgagacctacatcaagaccgccaccttcaccgagaactcgtcgagcaaggttttc
aaatggaagttcaaataatgttcaaaaactgaatgaatcggatattcaacatgaaattcc
attagctacaacggaaccttcaataactcctgagccaaaaaacaccgttgatccacatca
aataatgacacgaacaatcagtgttaatgactcggatgaccagagctttgaagagaatgg
tcttcgggaaatgcgagagcgaaaagttatgttcaaagcagcaacgcaagaacacgtggc
aacattccatgaaagatcgagtcctgtagaagaatggtcaagtgattctagagagagtct
tcatcttgaaatgtcccgttatgataacgtatctccaagtggtactattacaagaaatca
acgagaaccgataactaacctttctccagctgcacaaatgctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTCACATTCAACAGACGCAGCA 364 403 1545 Antisense
GACGCAGCATTCCAATCATCAAGGA 392 379 1561 Antisense
CCACCTTCACCGAGAACTCGTCGAG 647 271 1690 Antisense
GAACTCGTCGAGCAAGGTTTTCAAA 40 347 1703 Antisense
GAGCCAAAAAACACCGTTGATCCAC 25 385 1816 Antisense
ATGACTCGGATGACCAGAGCTTTGA 187 45 1871 Antisense
AGAACACGTGGCAACATTCCATGAA 45 73 1953 Antisense
TCTTCATCTTGAAATGTCCCGTTAT 54 617 2022 Antisense
GATAACGTATCTCCAAGTGGTACTA 406 419 2047 Antisense
GAACCGATAACTAACCTTTCTCCAG 247 347 2089 Antisense
CTTTCTCCAGCTGCACAAATGCTCT 322 223 2104 Antisense
Sequence Source Affymetrix Proprietary Database