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[193522_s_at] 7TM receptor, srx family /// 7 transmembrane receptor (rhodopsin family)

Description Y102A5C.22 /REP_DB=WormBase Gene ID /WP=CE20394 /TR=Q9XX72 /GB=CAA20963.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 25      4grp_total > 24      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-3)
A 		3.1
(0.4)
A 		4.4
(3)
A 		2.9
(-0)
A 		3
B 2.5
(3)
A 		2.3
(1.5)
A 		1.7
(-3)
A 		2.5
(3)
A 		1
C 1.6
(-3)
A 		2.1
(-2.5)
A 		4.2
(-0.6)
A 		8.1
(3)
A 		7
avr 1.8
(-3) 		2.5
(-1.4) 		3.4
(0.6) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.9
(3)
A 		2.3
(-0.4)
A 		2
(-1.1)
A 		1.1
(-3)
A 		1.5
(-2.1)
A 		1.6
(-1.9)
A 		3
B 3.7
(3)
A 		3.2
(1.9)
A 		2.8
(1)
A 		1
(-3)
A 		1.2
(-2.6)
A 		1.1
(-2.8)
A 		3
C 0.9
(-3)
A 		3.8
(3)
A 		1.8
(-1.1)
A 		2.6
(0.5)
A 		1.1
(-2.6)
A 		1.2
(-2.4)
A 		3
avr 2.8
(2) 		3.1
(3) 		2.2
(0) 		1.6
(-2) 		1.3
(-3) 		1.3
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.5
(-2.1)
A 		0.7
(-0.4)
A 		1.1
(3)
A 		0.4
(-3)
A 		1
B 0.8
(3)
A 		0.6
(-0)
A 		0.4
(-3)
A 		0.5
(-1.5)
A 		0
C 0.5
(-3)
A 		0.6
(-2.4)
A 		1.5
(3)
A 		1.4
(2.4)
A 		1
avr 0.6
(-3) 		0.6
(-3) 		1
(3) 		0.8
(0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(1.8)
A 		0.8
(3)
A 		0.4
(-1.8)
A 		0.3
(-3)
A 		0.4
(-1.8)
A 		0.4
(-1.8)
A 		1
B 1.3
(3)
A 		1.1
(1.8)
A 		0.7
(-0.6)
A 		0.3
(-3)
A 		0.5
(-1.8)
A 		0.4
(-2.4)
A 		1
C 0.3
(-3)
A 		1.2
(3)
A 		0.5
(-1.7)
A 		0.5
(-1.7)
A 		0.4
(-2.3)
A 		0.4
(-2.3)
A 		1
avr 0.8
(1) 		1
(3) 		0.5
(-2) 		0.4
(-3) 		0.4
(-3) 		0.4
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193522_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12965
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.22 NCBI
Target Description Y102A5C.22 /REP_DB=WormBase Gene ID /WP=CE20394 /TR=Q9XX72 /GB=CAA20963.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074892(11), NM_074894(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074892 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-54) (srx-54) mRNA, complete cds. 11/11 None
NM_074894 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-55) (srx-55) mRNA, complete cds. 11/11 None
SNAP00000003161 ENSEMBL cdna:SNAP chromosome:CEL140:V:16977797:16979161:1 9/11 None
Y102A5C.22 ENSEMBL cdna:known chromosome:CEL140:V:16977797:16979295:1 gene:Y102A5C.22 11/11 None
Y102A5C.24 ENSEMBL cdna:known chromosome:CEL140:V:16981588:16982822:1 gene:Y102A5C.24 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003162 8/11 Cross Hyb Matching Probes None
GENEFINDER00000003172 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003192 4/11 Cross Hyb Matching Probes None
SNAP00000030290 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030299 1/11 Cross Hyb Matching Probes None
T27C5.3 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16977796-16979295(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
7 transmembrane receptor (rhodopsin family)
Gene Symbol srx-54
srx-55
Ensembl Y102A5C.22
Y102A5C.24
Entrez Gene 190845 Entrez gene
190847 Entrez gene
SwissProt Q9XX72 EMBL-EBI
Q9XX70 EMBL-EBI
WormBase CE36333 Wormbase
CE20396 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20963 Hypothetical protein Y102A5C.22 [Caenorhabditis elegans] ref|NP_507293.2| Serpentine Receptor, class X family member (srx-54) [Caenorhabditis elegans] 1.0E-164
blast CAA20965 Hypothetical protein Y102A5C.24 [Caenorhabditis elegans] ref|NP_507295.1| Serpentine Receptor, class X family member (srx-55) [Caenorhabditis elegans] 1.0E-121
blast CAA20965 Hypothetical protein Y102A5C.24 [Caenorhabditis elegans] ref|NP_507295.1| Serpentine Receptor, class X family member (srx-55) [Caenorhabditis elegans] 1.0E-115
blast CAA20963 Hypothetical protein Y102A5C.22 [Caenorhabditis elegans] ref|NP_507293.2| Serpentine Receptor, class X family member (srx-54) [Caenorhabditis elegans] 1.0E-112
blast CAB03338 Hypothetical protein T10H4.9 [Caenorhabditis elegans] ref|NP_506786.2| Serpentine Receptor, class X family member (srx-51) [Caenorhabditis elegans] 1.0E-109
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507293.2 4 7-29,49-68,124-141,169-191
NP_507295.1 6 7-29,54-71,78-100,105-126,146-168,178-200
Y102A5C.22 4 7-29,49-68,124-141,169-191
Y102A5C.24 6 7-29,54-71,78-100,105-126,146-168,178-200
SNAP00000003161 4 21-43,63-85,90-107,135-157
Sequence
Target Sequence 
>C. ELEGANS:193522_S_AT
gtggctccagtcagatacgagtcgattttcagcgcatccaacaccacgaagctcatcata
ttctcctggaccctgaccattcttccatcattctacctctacgtttacaacgattgcaag
tactcttggtctccagagttctggctattcgcgttttccaccacaccggtgtgcttgacc
atctcctggtatgcagattttttgaagttcaacgcgatagttatcttgattgctgtgatc
gacgtggtaaccgtatcgaaagttagaagttataaggcaaagtccgcaaaaaagacaaat
tttgaaatgagttttctcaagcaggcgtgccttcaggcacttgtattcacgtgtgagctt
gtcacatacttcctgataactcccagaattgatccaaacaagaaatggataagatttgct
ctgtcgacagttgcatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTCCAGTCAGATACGAGTCGA 27 493 376 Antisense
ATACGAGTCGATTTTCAGCGCATCC 175 23 390 Antisense
TCCAACACCACGAAGCTCATCATAT 9 589 412 Antisense
TCCAGAGTTCTGGCTATTCGCGTTT 177 589 507 Antisense
TCAACGCGATAGTTATCTTGATTGC 540 631 584 Antisense
TGAGTTTTCTCAAGCAGGCGTGCCT 498 567 683 Antisense
TCTCAAGCAGGCGTGCCTTCAGGCA 24 613 690 Antisense
TTGTATTCACGTGTGAGCTTGTCAC 498 705 716 Antisense
CACGTGTGAGCTTGTCACATACTTC 559 199 723 Antisense
GGATAAGATTTGCTCTGTCGACAGT 186 511 782 Antisense
ATTTGCTCTGTCGACAGTTGCATGG 528 17 789 Antisense
Sequence Source Affymetrix Proprietary Database