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[193519_s_at]

Description T03D8.1A /REP_DB=WormBase Gene ID /WP=CE18918 /TR=Q9XTY6 /GB=CAB07405.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Phosphotyrosine interaction domain (PTB-PID).
Cluster 6grp_high1_10_10 > 59      6grp_total > 48      4grp_total > 39      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 660.8
(3)
P 		439
(-3)
A 		524.4
(-0.7)
A 		551.3
(0)
P 		222
B 651.4
(3)
P 		519.8
(-3)
A 		540.2
(-2.1)
P 		608
(1)
P 		132
C 721.3
(3)
P 		565.8
(-2.3)
A 		594.5
(-1.4)
P 		546.9
(-3)
P 		174
avr 677.8
(3) 		508.2
(-3) 		553
(-1.4) 		568.7
(-0.9) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 551
1 2 3 4 5 6 range
A 858
(3)
M 		729.5
(1.4)
P 		384.3
(-3)
P 		521.3
(-1.3)
P 		659
(0.5)
P 		816.9
(2.5)
P 		474
B 676.4
(3)
P 		600.8
(1.8)
P 		307.1
(-3)
P 		602.1
(1.8)
P 		594.2
(1.7)
P 		672.1
(2.9)
P 		369
C 662.4
(1.1)
P 		574
(-1.5)
P 		648.8
(0.7)
P 		523.3
(-3)
P 		555.5
(-2.1)
P 		727.2
(3)
P 		204
avr 732.3
(2.9) 		634.8
(0.9) 		446.7
(-3) 		548.9
(-0.9) 		602.9
(0.2) 		738.7
(3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 240.6
(3)
P 		95.3
(-2.5)
A 		137.1
(-0.9)
A 		80.7
(-3)
P 		160
B 207.7
(3)
P 		128.4
(-2.8)
A 		125.2
(-3)
P 		129.6
(-2.7)
P 		83
C 238.8
(3)
P 		162.7
(-0.1)
A 		207.2
(1.7)
P 		92.2
(-3)
P 		147
avr 229
(3) 		128.8
(-1.7) 		156.5
(-0.4) 		100.8
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 158.2
(-0.5)
M 		259.4
(3)
P 		83.7
(-3)
P 		132.2
(-1.3)
P 		198.9
(0.9)
P 		198.9
(0.9)
P 		176
B 235.4
(2.5)
P 		200
(1.3)
P 		74.6
(-3)
P 		159.5
(-0.1)
P 		241.4
(2.7)
P 		250.6
(3)
P 		176
C 245.5
(3)
P 		175.2
(-0)
P 		165.1
(-0.4)
P 		105.2
(-3)
P 		179.7
(0.2)
P 		243.5
(2.9)
P 		140
avr 213
(2.1) 		211.5
(2.1) 		107.8
(-3) 		132.3
(-1.8) 		206.7
(1.8) 		231
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193519_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13542
Sequence Type Exemplar sequence
Representative Public ID T03D8.1A NCBI
Target Description T03D8.1A /REP_DB=WormBase Gene ID /WP=CE18918 /TR=Q9XTY6 /GB=CAB07405.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Phosphotyrosine interaction domain (PTB-PID).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075620(11), NM_001028927(11), NM_001028926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075620 NCBI Caenorhabditis elegans NUMb related family member (num-1) (num-1) mRNA, complete cds. 11/11 None
NM_001028927 NCBI Caenorhabditis elegans NUMb related family member (num-1) (num-1) mRNA, complete cds. 11/11 None
NM_001028926 NCBI Caenorhabditis elegans NUMb related family member (num-1) (num-1) mRNA, complete cds. 11/11 None
SNAP00000040022 ENSEMBL cdna:SNAP chromosome:CEL140:V:20831163:20835275:1 11/11 None
GENEFINDER00000040028 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20833666:20836751:1 11/11 None
T03D8.1a ENSEMBL cdna:known chromosome:CEL140:V:20830430:20835603:1 gene:T03D8.1 11/11 None
T03D8.1c ENSEMBL cdna:known chromosome:CEL140:V:20830562:20835275:1 gene:T03D8.1 11/11 None
T03D8.1b ENSEMBL cdna:known chromosome:CEL140:V:20833617:20835275:1 gene:T03D8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20830429-20835275(+) 100.0 100.0
Public Domain and Genome References
Ensembl T03D8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07405 Hypothetical protein T03D8.1a [Caenorhabditis elegans] ref|NP_508021.1| NUMb related family member (num-1) [Caenorhabditis elegans] gb|AAK28740.1| C kinase adapter 1 [Caenorhabditis elegans] sp|Q9XTY6|NUMB1_CAEEL Numb related protein 1 (Protein kinase C adapter 1) (CKA1) 0.0
blast CAD30449 Hypothetical protein T03D8.1c [Caenorhabditis elegans] ref|NP_001024098.1| NUMb related family member (num-1) [Caenorhabditis elegans] gb|AAK28741.1| C kinase adapter 1s [Caenorhabditis elegans] 0.0
blast CAE61638 Hypothetical protein CBG05571 [Caenorhabditis briggsae] 0.0
blast CAB07407 Hypothetical protein T03D8.1b [Caenorhabditis elegans] ref|NP_001024097.1| NUMb related family member (num-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010449 EMBL-EBI NUMB phenylalanine-rich 5.1E-89
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 7.2E-43
Pfam IPR010449 EMBL-EBI NUMB phenylalanine-rich 5.1E-89
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 7.2E-43
Pfam IPR010449 EMBL-EBI NUMB phenylalanine-rich 2.3E-6
Pfam IPR010449 EMBL-EBI NUMB phenylalanine-rich 3.2E-73
Pfam IPR010449 EMBL-EBI NUMB phenylalanine-rich 2.3E-6
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 7.2E-43
Pfam IPR006032 EMBL-EBI Ribosomal protein S12/S23 3.7E-30
Sequence
Target Sequence 
>C. ELEGANS:193519_S_AT
ggatccgctgggactcggaatcacaccgcccgtcgtcaccaaaacatcaggctctctttc
aaacaatggtctcgatggaatcaatttgaactggaagtcgattccggcgcctgttcatca
aatgcagcaacataatgcgaatggagattttgttgccgcgtggcctcaaaatactataga
aaaaccgacagtcggaccattggataagcttcagaagcagtttgaagatatcaaactgat
aagcatctcatcgggtgaaaatacgccaacaactcgatcaaaagccgacgaatggctgga
tgatgtgctgagagtgtcgatgagtatgtcaccaacgtcaccatcatcagatccaccgtc
gacttcatcgtactctgttcttccgaaatctggacccccacccgcccatgcgcctcctcc
actaccagtgagacaagcggtttcgaatggaagcccgtcgatttatcaacagcagttaca
gcaagcaaatagtactcgaaattcgccggctggaataaactggaactcgtctccaaaccc
aatgaaaatctcccagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCCGCTGGGACTCGGAATCACA 240 511 1170 Antisense
GCCCGTCGTCACCAAAACATCAGGC 268 287 1197 Antisense
AACATCAGGCTCTCTTTCAAACAAT 251 137 1212 Antisense
TGAACTGGAAGTCGATTCCGGCGCC 68 573 1256 Antisense
CGGCGCCTGTTCATCAAATGCAGCA 57 243 1274 Antisense
TTGTTGCCGCGTGGCCTCAAAATAC 135 695 1319 Antisense
ATGAGTATGTCACCAACGTCACCAT 194 45 1489 Antisense
TTCATCGTACTCTGTTCTTCCGAAA 513 683 1533 Antisense
CCTCCTCCACTACCAGTGAGACAAG 503 267 1582 Antisense
GGAAGCCCGTCGATTTATCAACAGC 594 529 1618 Antisense
AAACCCAATGAAAATCTCCCAGCCA 389 125 1704 Antisense
Sequence Source Affymetrix Proprietary Database