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[193507_at] Zinc finger, C4 type (two domains)

Description C47F8.8 /REP_DB=WormBase Gene ID /WP=CE17577 /GEN=nhr-81 /TR=O62116 /GB=CAA15840.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 90      4grp_total > 19      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 31
(-1.1)
A 		8.9
(-3)
A 		8.8
(-3)
A 		78
(3)
A 		69
B 11.1
(-3)
A 		30.7
(2)
A 		34.7
(3)
A 		20.2
(-0.7)
A 		24
C 33
(-1.3)
A 		78.3
(1.5)
A 		5.2
(-3)
A 		101.8
(3)
A 		97
avr 25
(-2) 		39.3
(-0.3) 		16.2
(-3) 		66.7
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 43.2
(0.9)
A 		31.8
(-0.2)
A 		35.8
(0.2)
A 		64
(3)
A 		41.6
(0.8)
M 		3.7
(-3)
A 		60
B 52.1
(3)
A 		39.5
(0.3)
A 		24.1
(-3)
A 		24.1
(-3)
A 		27.5
(-2.3)
A 		33.6
(-1)
A 		28
C 5.1
(-2.9)
A 		4.1
(-3)
A 		7.9
(-2.6)
A 		65.9
(3)
A 		44.6
(0.9)
A 		48.9
(1.3)
A 		62
avr 33.5
(-0.7) 		25.1
(-2.5) 		22.6
(-3) 		51.3
(3) 		37.9
(0.2) 		28.7
(-1.7) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 11.3
(2.9)
A 		1.9
(-3)
A 		2.3
(-2.7)
A 		11.4
(3)
A 		10
B 3.5
(-3)
A 		7.6
(2.5)
A 		8
(3)
A 		4.3
(-1.9)
A 		5
C 10.9
(-0.4)
A 		22.5
(3)
A 		1.8
(-3)
A 		17.2
(1.5)
A 		21
avr 8.6
(0.9) 		10.7
(2.7) 		4
(-3) 		11
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8
(-0.2)
A 		11.3
(1.1)
A 		7.8
(-0.3)
A 		16.2
(3)
A 		12.6
(1.6)
M 		0.9
(-3)
A 		15
B 18.1
(3)
A 		13.1
(0.6)
A 		5.8
(-3)
A 		6.4
(-2.7)
A 		11.2
(-0.4)
A 		12.5
(0.3)
A 		12
C 1.9
(-2.8)
A 		1.3
(-3)
A 		2
(-2.7)
A 		13.3
(1.8)
A 		14.4
(2.2)
A 		16.4
(3)
A 		15
avr 9.3
(0.3) 		8.6
(-0.3) 		5.2
(-3) 		12
(2.4) 		12.7
(3) 		9.9
(0.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.963
Sequence Type Exemplar sequence
Representative Public ID C47F8.8 NCBI
Target Description C47F8.8 /REP_DB=WormBase Gene ID /WP=CE17577 /GEN=nhr-81 /TR=O62116 /GB=CAA15840.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060717 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-81) (nhr-81) mRNA, complete cds. 11/11 None
SNAP00000020213 ENSEMBL cdna:SNAP chromosome:CEL140:I:12336222:12337616:-1 11/11 None
GENEFINDER00000020216 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12336222:12337616:-1 11/11 None
C47F8.8 ENSEMBL cdna:known chromosome:CEL140:I:12336222:12337616:-1 gene:C47F8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12336152-12337547(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-81
Ensembl C47F8.8
Entrez Gene 191728 Entrez gene
SwissProt O62116 EMBL-EBI
WormBase CE34166 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15840 Hypothetical protein C47F8.8 [Caenorhabditis elegans] ref|NP_493118.2| Nuclear Hormone Receptor family member (nhr-81) [Caenorhabditis elegans] 0.0
blast CAB04372 Hypothetical protein F41D3.1 [Caenorhabditis elegans] ref|NP_493090.1| Nuclear Hormone Receptor family member (nhr-82) [Caenorhabditis elegans] 3.0E-93
blast CAA18369 Hypothetical protein ZK1025.10 [Caenorhabditis elegans] ref|NP_492932.1| ZK1025.10 [Caenorhabditis elegans] 7.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.4E-13
Sequence
Target Sequence 
>C. ELEGANS:193507_AT
gatgttaatcaccgctcgtcaaagtggcccatcaatggaggaatgcctgcgatgccctgg
agttgacatgcttgagaaggaagatgtggaggctctgctgagatactacaggttctcaaa
catctgggttgactcggtgctcatcgattccgttttggaaagcgcaaaaggtgatagcca
cactgatactgatgaccgactatcccgcttcatccaagaagtcaaatcaactctgggatc
ctctctggctcatctcaacctgaacatctacgagttcgcagctttcaaggcattgtgtat
ctggaagctcagattctacgagacgtcttttgctcagaaaatcattgctcatgagcatta
tgaaggtgtcactggcgctctgaggaatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTAATCACCGCTCGTCAAAGT 627 407 456 Antisense
AATGGAGGAATGCCTGCGATGCCCT 298 163 489 Antisense
GATGCCCTGGAGTTGACATGCTTGA 687 413 506 Antisense
AAACATCTGGGTTGACTCGGTGCTC 32 129 573 Antisense
CGGTGCTCATCGATTCCGTTTTGGA 159 243 590 Antisense
GCCACACTGATACTGATGACCGACT 253 279 632 Antisense
ACTATCCCGCTTCATCCAAGAAGTC 689 101 654 Antisense
GTCAAATCAACTCTGGGATCCTCTC 543 463 676 Antisense
ACGAGTTCGCAGCTTTCAAGGCATT 599 93 725 Antisense
GATTCTACGAGACGTCTTTTGCTCA 245 431 767 Antisense
GTGTCACTGGCGCTCTGAGGAATTA 657 485 821 Antisense
Sequence Source Affymetrix Proprietary Database