[Home] | [Total List]

[193501_s_at] rho GDP dissociation inhibitor

Description F46H6.1 /REP_DB=WormBase Gene ID /WP=CE04595 /GEN=rhi-1 /TR=SW:Q20496 /GB=AAF99947.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=rho GDP dissociation inhibitor
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 65      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 76      6grp_total > 55      4grp_total > 07      6grp_cgc > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 979.6
(1.9)
P 		793
(-3)
P 		917.6
(0.3)
P 		1020.3
(3)
P 		227
B 919.1
(-2.5)
P 		888.2
(-3)
P 		993.2
(-1.5)
P 		1300.1
(3)
P 		412
C 1068.1
(3)
P 		808.1
(-3)
P 		969.7
(0.7)
P 		1027.4
(2.1)
P 		260
avr 988.9
(0.3) 		829.8
(-3) 		960.2
(-0.3) 		1115.9
(3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 745
1 2 3 4 5 6 range
A 1013.2
(-0.7)
P 		1055
(-0.2)
P 		1324
(2.6)
P 		1214.2
(1.4)
P 		790
(-3)
P 		1365.8
(3)
P 		576
B 1343.8
(1.1)
P 		1065.7
(-2.1)
P 		1516.1
(3)
P 		1033.8
(-2.4)
P 		984
(-3)
P 		1488.6
(2.7)
P 		532
C 1513.9
(2.8)
P 		1056.2
(-1.6)
P 		1213.4
(-0.1)
P 		1026.1
(-1.9)
P 		908.5
(-3)
P 		1534.6
(3)
P 		626
avr 1290.3
(1.2) 		1059
(-1.3) 		1351.2
(1.8) 		1091.4
(-0.9) 		894.2
(-3) 		1463
(3) 		569
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 356.7
(3)
P 		172.1
(-2.3)
P 		239.9
(-0.4)
P 		149.4
(-3)
P 		207
B 293.1
(3)
P 		219.4
(-3)
P 		230.1
(-2.1)
P 		277.1
(1.7)
P 		74
C 353.6
(3)
P 		232.3
(-1)
P 		338
(2.5)
P 		173.2
(-3)
P 		180
avr 334.5
(3) 		207.9
(-2.6) 		269.3
(0.1) 		199.9
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 186.8
(-3)
P 		375.2
(3)
P 		288.3
(0.2)
P 		308
(0.9)
P 		238.4
(-1.4)
P 		332.5
(1.6)
P 		188
B 467.6
(1.1)
P 		354.7
(-1.3)
P 		368.2
(-1)
P 		273.8
(-3)
P 		399.8
(-0.3)
P 		555.1
(3)
P 		281
C 561.1
(3)
P 		322.3
(-1)
P 		308.8
(-1.3)
P 		206.3
(-3)
P 		294
(-1.5)
P 		513.7
(2.2)
P 		355
avr 405.2
(1.2) 		350.7
(-0.4) 		321.8
(-1.3) 		262.7
(-3) 		310.7
(-1.6) 		467.1
(3) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193501_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17109
Sequence Type Exemplar sequence
Representative Public ID F46H6.1 NCBI
Target Description F46H6.1 /REP_DB=WormBase Gene ID /WP=CE04595 /GEN=rhi-1 /TR=SW:Q20496 /GB=AAF99947.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=rho GDP dissociation inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076373 NCBI Caenorhabditis elegans RHo GDI family member (rhi-1) (rhi-1) mRNA, complete cds. 11/11 None
GENEFINDER00000026678 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4508487:4510724:1 11/11 None
F46H6.1.1 ENSEMBL cdna:known chromosome:CEL140:X:4508478:4510931:1 gene:F46H6.1 11/11 None
F46H6.1.2 ENSEMBL cdna:known chromosome:CEL140:X:4508480:4510724:1 gene:F46H6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026674 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4508487-4510725(+) 100.0 100.0
Public Domain and Genome References
Gene Title rho GDP dissociation inhibitor
Gene Symbol rhi-1
Ensembl F46H6.1
Entrez Gene 180721 Entrez gene
SwissProt Q20496 EMBL-EBI
WormBase CE04595 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265115_AT Rho GDP-dissociation inhibitor family protein at
CANINE_2:CFAAFFX.9763.1.S1_S_AT similar to Rho GDP dissociation inhibitor (GDI) alpha cfa
DROSOPHILA_2:1633804_AT dm
DROSGENOME1:153882_AT dm
HG-U133_PLUS_2:201168_X_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133A:201168_X_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133A_2:201168_X_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133_PLUS_2:213606_S_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133A_2:213606_S_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-FOCUS:213606_S_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133A:213606_S_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133A:201167_X_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133_PLUS_2:201167_X_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133A_2:201167_X_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133_PLUS_2:211716_X_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133A:211716_X_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U133A_2:211716_X_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HUGENEFL:X69550_AT Rho GDP dissociation inhibitor (GDI) alpha hs
U133_X3P:G4757767_3P_AT Rho GDP dissociation inhibitor (GDI) alpha hs
U133_X3P:G13543380_3P_S_AT Rho GDP dissociation inhibitor (GDI) alpha hs
U133_X3P:HS.159161.1.A1_3P_S_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HG-U95AV2:40164_AT Rho GDP dissociation inhibitor (GDI) alpha hs
HU35KSUBC:RC_T15904_AT Rho GDP dissociation inhibitor (GDI) alpha hs
MOUSE430_2:1451168_A_AT Rho GDP dissociation inhibitor (GDI) alpha mm
MOE430A:1451168_A_AT Rho GDP dissociation inhibitor (GDI) alpha mm
MOUSE430A_2:1451168_A_AT Rho GDP dissociation inhibitor (GDI) alpha mm
MU11KSUBA:AA529001_G_AT Rho GDP dissociation inhibitor (GDI) alpha mm
MU11KSUBA:AA529001_AT Rho GDP dissociation inhibitor (GDI) alpha mm
MG-U74AV2:96360_AT Rho GDP dissociation inhibitor (GDI) alpha mm
MG-U74BV2:164687_I_AT Rho GDP dissociation inhibitor (GDI) alpha mm
MU19KSUBC:TC35916_AT Rho GDP dissociation inhibitor (GDI) alpha (Arhgdia), mRNA mm
RG-U34C:RC_AA858718_AT Rho GDP dissociation inhibitor (GDI) alpha rn
RG-U34C:RC_AI175833_AT Rho GDP dissociation inhibitor (GDI) alpha rn
RAE230A:1371366_AT Rho GDP dissociation inhibitor (GDI) alpha rn
RAT230_2:1371366_AT Rho GDP dissociation inhibitor (GDI) alpha rn
RAE230B:1398108_AT Rho GDP dissociation inhibitor (GDI) alpha rn
RAT230_2:1398108_AT Rho GDP dissociation inhibitor (GDI) alpha rn
YEAST_2:1776814_AT Rho GDP dissociation inhibitor involved in the localization and regulation of Cdc42p Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5094 Rho GDP-dissociation inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99947 Rho gdi protein 1 [Caenorhabditis elegans] ref|NP_508774.1| RHo GDI family member (rhi-1) [Caenorhabditis elegans] sp|Q20496|GDIR_CAEEL Probable rho GDP-dissociation inhibitor (Rho GDI) 1.0E-106
blast AAD10299 Rho GDP dissociation inhibitor [Caenorhabditis elegans] 1.0E-106
blast CAE68603 Hypothetical protein CBG14479 [Caenorhabditis briggsae] 7.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR000406 EMBL-EBI RHO protein GDP dissociation inhibitor 2.9E-8
Pfam IPR000406 EMBL-EBI RHO protein GDP dissociation inhibitor 1.9E-24
Sequence
Target Sequence 
>C. ELEGANS:193501_S_AT
aacacctccgaatatcagtacaagcaaccaccacaaaagagcatcgacgagcttctcaat
gctgacaaggaggacgagtctctaaaagtgtacaaagccaaacttctcggccaaggaaca
gtcattgtcgacgagaagaacccactccgcgtgattgtccgatccgtcgagctgctcatt
aatggtaaaactgcgcaatcatttgacttatcggatccagcaaaacttgtcaactctgac
ttgtctgtttccatcaaagaaggttccaattaccggttaagctttgctttccatgtgcaa
cgcgaaattacgtccggattgcactacaaacataaggtgaaacgatccggtatcactgtg
gagaatgagaagtacatgatgggaagctacgcgccaaaacttgagattcaggagtacaaa
tcaccaaacgaagaagctccgtctggaatgatgcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACCTCCGAATATCAGTACAAGC 665 135 40 Antisense
CAACCACCACAAAAGAGCATCGACG 601 185 64 Antisense
GACGAGCTTCTCAATGCTGACAAGG 497 377 85 Antisense
ACAAAGCCAAACTTCTCGGCCAAGG 486 111 131 Antisense
TTGTCGACGAGAAGAACCCACTCCG 481 705 164 Antisense
GTCAACTCTGACTTGTCTGTTTCCA 162 465 268 Antisense
AAGCTTTGCTTTCCATGTGCAACGC 436 149 318 Antisense
GAAATTACGTCCGGATTGCACTACA 492 361 343 Antisense
GAAACGATCCGGTATCACTGTGGAG 17 359 378 Antisense
GAAGCTACGCGCCAAAACTTGAGAT 665 341 422 Antisense
GAAGCTCCGTCTGGAATGATGCATC 662 341 472 Antisense
Sequence Source Affymetrix Proprietary Database