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[193498_at]

Description E03G2.3_rc /REP_DB=WormBase Gene ID /WP=CE03120 /CHR=X /FEA=Sanger Annotation /REVCOMP /DEF=locus:mec-5 collagen-like repeats (HINXTON) TR:Q19049 protein_id:CAA92149.1
Cluster 4grp_high_8_8 > 21      6grp_total > 34      4grp_total > 18      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 107.4
(-3)
P 		143.5
(0.4)
A 		130.6
(-0.8)
M 		171.9
(3)
P 		65
B 148.6
(-0.4)
P 		143.5
(-1.2)
P 		131.8
(-3)
P 		170.9
(3)
P 		39
C 124.9
(-2.5)
P 		134.6
(-2)
P 		116.2
(-3)
P 		223.5
(3)
P 		107
avr 127
(-2.9) 		140.5
(-1.6) 		126.2
(-3) 		188.8
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 139.3
(3)
P 		101.9
(-0.4)
P 		98.2
(-0.7)
A 		79
(-2.4)
P 		87.7
(-1.7)
A 		72.9
(-3)
A 		66
B 124.7
(1.9)
P 		107.1
(0.8)
P 		142.9
(3)
P 		45.4
(-3)
A 		67.7
(-1.6)
A 		55.3
(-2.4)
P 		98
C 84.4
(-0.6)
P 		125.3
(3)
P 		63.3
(-2.5)
A 		71.8
(-1.7)
A 		57.2
(-3)
A 		74
(-1.5)
A 		68
avr 116.1
(3) 		111.4
(2.4) 		101.5
(1.3) 		65.4
(-3) 		70.9
(-2.3) 		67.4
(-2.8) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 39.1
(3)
P 		31.1
(-0.5)
A 		34.1
(0.8)
M 		25.2
(-3)
P 		14
B 47.4
(3)
P 		35.4
(-1.3)
P 		30.5
(-3)
P 		36.4
(-0.9)
P 		17
C 41.3
(3)
P 		38.7
(-1.3)
P 		40.5
(1.7)
P 		37.7
(-3)
P 		4
avr 42.6
(3) 		35.1
(-1.7) 		35
(-1.8) 		33.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 25.7
(-0.4)
P 		36.2
(3)
P 		21.4
(-1.8)
A 		20
(-2.3)
P 		26.5
(-0.1)
A 		17.7
(-3)
A 		19
B 43.4
(3)
P 		35.6
(1.5)
P 		34.7
(1.3)
P 		12
(-3)
A 		27.5
(-0)
A 		20.6
(-1.4)
P 		31
C 31.3
(1.3)
P 		38.2
(3)
P 		16.1
(-2.6)
A 		14.4
(-3)
A 		18.5
(-2)
A 		24.8
(-0.4)
A 		24
avr 33.5
(2.1) 		36.7
(3) 		24.1
(-0.6) 		15.5
(-3) 		24.2
(-0.5) 		21
(-1.4) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28165
Sequence Type Exemplar sequence
Representative Public ID E03G2.3 NCBI
Target Description E03G2.3_rc /REP_DB=WormBase Gene ID /WP=CE03120 /CHR=X /FEA=Sanger Annotation /REVCOMP /DEF=locus:mec-5 collagen-like repeats (HINXTON) TR:Q19049 protein_id:CAA92149.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) E03G2.3
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
E03G2.3 E03G2.3_rc /REP_DB=WormBase Gene ID /WP=CE03120 /CHR=X /FEA=Sanger Annotation /REVCOMP /DEF=locus:mec-5 collagen-like repeats (HINXTON) TR:Q19049 protein_id:CAA92149.1 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171808 11/11 Negative Strand Matching Probes A 
SNAP00000041428 11/11 Negative Strand Matching Probes None
GENEFINDER00000041433 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15943927-15948727(-) 99.88 99.88
Public Domain and Genome References
Ensembl E03G2.3
Sequence
Target Sequence 
>C. ELEGANS:193498_AT
tcataccaggcactcctgggactcctccatttccaacgtctcccttctttccagggaatc
ccggcgaccctggtcttcccggaagtccatcttcacccttactgcctggccatccaggag
caccgggcagaccgttggttcctgggagtccttccattcccttttctcctttcgagccgg
gctgcccagttgatccagggttcgccaacctttccaggtataccggtgtctcccttgagt
ccaggaattccagagtttccaccctctcctttttgtccagggaaaccaaccctgctacac
tacacttaccatcctctgaccgatctcctttctctccttttgaccctgggaatcctggtg
acccatttgttccaggtggcccaggacgaccgagatcacttacacgtgcattcagatttt
ttacgtggtctaaaatcatttcaatatctgcactatgtttgttgatttctgtctggattg
cgatgacagccgctgtgtcaagggcacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATACCAGGCACTCCTGGGACTCC 208 619 285 Antisense
TGGTCTTCCCGGAAGTCCATCTTCA 266 549 355 Antisense
TTACTGCCTGGCCATCCAGGAGCAC 7 683 383 Antisense
GCCAACCTTTCCAGGTATACCGGTG 205 265 488 Antisense
GTCTCCCTTGAGTCCAGGAATTCCA 228 469 512 Antisense
TCTCCTTTTGACCCTGGGAATCCTG 444 607 617 Antisense
GAATCCTGGTGACCCATTTGTTCCA 358 327 634 Antisense
GACGACCGAGATCACTTACACGTGC 410 379 669 Antisense
TGCACTATGTTTGTTGATTTCTGTC 506 577 733 Antisense
GTCTGGATTGCGATGACAGCCGCTG 114 473 755 Antisense
ACAGCCGCTGTGTCAAGGGCACAAT 99 109 770 Antisense
Sequence Source Affymetrix Proprietary Database