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[193495_at] 7 transmembrane receptor (rhodopsin family)

Description Y116A8B.5 /REP_DB=WormBase Gene ID /WP=CE16682 /TR=O62403 /GB=CAA16290.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 16      4grp_total > 13      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 103.7
(-0.5)
A 		91.5
(-3)
A 		102.1
(-0.8)
A 		121
(3)
A 		30
B 104.2
(-0.8)
A 		104
(-0.8)
A 		87.3
(-3)
A 		133
(3)
A 		46
C 162
(1.1)
A 		79.3
(-2.9)
A 		77.3
(-3)
A 		200.6
(3)
A 		123
avr 123.3
(0.3) 		91.6
(-2.7) 		88.9
(-3) 		151.5
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 195.2
(3)
A 		106
(-0.9)
A 		59.5
(-2.9)
A 		56.2
(-3)
A 		73.6
(-2.2)
A 		87.5
(-1.6)
A 		139
B 168.3
(3)
A 		139.2
(1.3)
P 		64.1
(-3)
A 		74.4
(-2.4)
A 		75.6
(-2.3)
A 		73.9
(-2.4)
A 		104
C 131.3
(2.5)
P 		138.3
(3)
A 		82.6
(-1.2)
A 		63
(-2.7)
A 		59
(-3)
A 		60.4
(-2.9)
P 		79
avr 164.9
(3) 		127.8
(0.8) 		68.7
(-2.7) 		64.5
(-3) 		69.4
(-2.7) 		73.9
(-2.4) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 37.8
(3)
A 		19.9
(-2.3)
A 		26.7
(-0.3)
A 		17.7
(-3)
A 		20
B 33.2
(3)
A 		25.7
(-0.5)
A 		20.2
(-3)
A 		28.3
(0.7)
A 		13
C 53.6
(3)
A 		22.8
(-3)
A 		26.9
(-2.2)
A 		33.8
(-0.9)
A 		31
avr 41.5
(3) 		22.8
(-3) 		24.6
(-2.4) 		26.6
(-1.8) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 36
(2.6)
A 		37.7
(3)
A 		13
(-3)
A 		14.2
(-2.7)
A 		22.2
(-0.8)
A 		21.3
(-1)
A 		25
B 58.6
(3)
A 		46.3
(1.3)
P 		15.6
(-3)
A 		19.7
(-2.4)
A 		30.7
(-0.9)
A 		27.6
(-1.3)
A 		43
C 48.7
(3)
P 		42.2
(1.9)
A 		21
(-1.6)
A 		12.7
(-3)
A 		19.1
(-1.9)
A 		20.2
(-1.8)
P 		36
avr 47.8
(3) 		42.1
(1.9) 		16.5
(-2.8) 		15.5
(-3) 		24
(-1.4) 		23
(-1.6) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9078
Sequence Type Exemplar sequence
Representative Public ID Y116A8B.5 NCBI
Target Description Y116A8B.5 /REP_DB=WormBase Gene ID /WP=CE16682 /TR=O62403 /GB=CAA16290.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070655 NCBI Caenorhabditis elegans Y116A8B.5 (Y116A8B.5) mRNA, complete cds. 11/11 None
GENEFINDER00000044307 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17225970:17231011:-1 11/11 None
Y116A8B.5 ENSEMBL cdna:known chromosome:CEL140:IV:17225862:17231011:-1 gene:Y116A8B.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044305 3/11 Cross Hyb Matching Probes None
SNAP00000044306 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17225867-17231017(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl Y116A8B.5
Entrez Gene 190990 Entrez gene
SwissProt O62403 EMBL-EBI
WormBase CE16682 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16290 Hypothetical protein Y116A8B.5 [Caenorhabditis elegans] ref|NP_503056.1| Y116A8B.5 [Caenorhabditis elegans] 0.0
blast CAE57408 Hypothetical protein CBG00362 [Caenorhabditis briggsae] 0.0
blast AAA27938 Hypothetical protein C06G4.5 [Caenorhabditis elegans] 2.0E-33
blast AAA27938 Hypothetical protein C06G4.5 [Caenorhabditis elegans] 4.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.4E-13
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.4E-20
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.4E-13
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.4E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503056.1 8 27-44,54-73,86-105,115-137,190-212,253-275,308-330,345-367
Y116A8B.5 8 27-44,54-73,86-105,115-137,190-212,253-275,308-330,345-367
GENEFINDER00000044307 7 31-53,74-91,101-123,176-198,239-261,294-316,331-353
Sequence
Target Sequence 
>C. ELEGANS:193495_AT
ttcttttctacttcctgtgttggacacctcaatggacactgaatatcatgtcacaattca
atttgatcgccgtttcatggatgactccagcactttcggcaatgttttttgtggcgcatt
tgttggtatgtttcaactcggcagctaatccagttctctatgcatacatcaatcgggaac
ttcgttcccaacacgtcatggcaatgcacagaaaacgacactcgttaggtcatgagcaac
agcaacgattaaatcaggcgagactttccatgcaatcccgtccttctgacgcttcagcta
cagttttctcgaaactcggcgacagtgacgccggtattttcaacaggctctcaaatttcc
aac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTTCTACTTCCTGTGTTGGAC 261 691 944 Antisense
GTTGGACACCTCAATGGACACTGAA 704 435 962 Antisense
TTGATCGCCGTTTCATGGATGACTC 212 705 1006 Antisense
CTCCAGCACTTTCGGCAATGTTTTT 126 235 1028 Antisense
GTATGTTTCAACTCGGCAGCTAATC 574 455 1069 Antisense
AGCTAATCCAGTTCTCTATGCATAC 372 79 1086 Antisense
TTCGTTCCCAACACGTCATGGCAAT 225 687 1124 Antisense
ATCAGGCGAGACTTTCCATGCAATC 249 29 1196 Antisense
ACGCTTCAGCTACAGTTTTCTCGAA 2 91 1232 Antisense
GACAGTGACGCCGGTATTTTCAACA 518 369 1264 Antisense
TTCAACAGGCTCTCAAATTTCCAAC 84 687 1282 Antisense
Sequence Source Affymetrix Proprietary Database