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[193492_at] E. gracilis major membrane skeletal protein

Description T26C11.2 /REP_DB=WormBase Gene ID /WP=CE05021 /TR=Q22807 /GB=AAC48211.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=E. gracilis major membrane skeletal protein
Cluster 6grp_total > 93      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 1.2
(-3)
A 		9.5
(-1.3)
A 		31
(3)
A 		6.3
(-2)
A 		30
B 17.1
(-2.1)
A 		84.8
(3)
A 		16.9
(-2.1)
A 		5.2
(-3)
A 		80
C 5.3
(-3)
A 		11.3
(-2.5)
A 		11.6
(-2.5)
A 		76.7
(3)
A 		71
avr 7.9
(-3) 		35.2
(3) 		19.8
(-0.4) 		29.4
(1.7) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 11
(-1.7)
A 		3.7
(-3)
A 		22.6
(0.2)
A 		11.5
(-1.7)
A 		38.6
(3)
A 		9.8
(-2)
A 		35
B 10.1
(-0)
A 		4.4
(-2.1)
A 		13
(1.1)
A 		2.1
(-3)
A 		4.2
(-2.2)
A 		18.2
(3)
A 		16
C 6
(-1.4)
A 		3.4
(-2.4)
A 		6.8
(-1.1)
A 		14.3
(1.8)
A 		17.4
(3)
A 		1.9
(-3)
A 		16
avr 9
(-1.1) 		3.8
(-3) 		14.1
(0.8) 		9.3
(-1) 		20.1
(3) 		10
(-0.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 0.4
(-3)
A 		2.1
(-1.7)
A 		8.1
(3)
A 		0.9
(-2.6)
A 		8
B 5.5
(-1.7)
A 		21
(3)
A 		3.9
(-2.2)
A 		1.1
(-3)
A 		20
C 1.8
(-3)
A 		3.2
(-2.2)
A 		4
(-1.8)
A 		12.9
(3)
A 		11
avr 2.6
(-3) 		8.8
(3) 		5.3
(-0.4) 		5
(-0.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2
(-2.6)
A 		1.3
(-3)
A 		4.9
(-0.9)
A 		2.9
(-2.1)
A 		11.6
(3)
A 		2.4
(-2.4)
A 		10
B 3.5
(-0.2)
A 		1.5
(-2.1)
A 		3.2
(-0.5)
A 		0.6
(-3)
A 		1.7
(-1.9)
A 		6.8
(3)
A 		6
C 2.2
(-1.1)
A 		1
(-2.5)
A 		1.7
(-1.7)
A 		2.9
(-0.2)
A 		5.6
(3)
A 		0.6
(-3)
A 		5
avr 2.6
(-1.4) 		1.3
(-3) 		3.3
(-0.6) 		2.1
(-2) 		6.3
(3) 		3.3
(-0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18410
Sequence Type Exemplar sequence
Representative Public ID T26C11.2 NCBI
Target Description T26C11.2 /REP_DB=WormBase Gene ID /WP=CE05021 /TR=Q22807 /GB=AAC48211.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=E. gracilis major membrane skeletal protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075936(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075936 NCBI Caenorhabditis elegans T26C11.2 (T26C11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000040405 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1836331:1839707:1 10/11 None
T26C11.2 ENSEMBL cdna:known chromosome:CEL140:X:1836331:1837362:1 gene:T26C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1836709-1837362(+) 15.41 63.28
Public Domain and Genome References
Gene Title E. gracilis major membrane skeletal protein
Ensembl T26C11.2
Entrez Gene 188918 Entrez gene
SwissProt Q22807 EMBL-EBI
WormBase CE05021 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254772_AT proline-rich extensin-like family protein at
Protein Similarities
Method ID Description E-Value
blast NP_508337 T26C11.2 [Caenorhabditis elegans] gb|AAC48211.1| Hypothetical protein T26C11.2 [Caenorhabditis elegans] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:193492_AT
tgcctaaatctaaacctaagtctgagcctttcccaaaccctatgccattcccaaagccta
tgccgaagccgaagcctaagcctaagcctatgcctaagcataagcctaagcctttcccaa
agcctatgcttttcccaaagcctatgcctatcccaaagcctatgcctttcccaaagccta
tgcctaagcccatgcctaagcataagcctaagcctttcccaaagcctatgcttttcccaa
agcctatgcctatcccaaagcctatgccattcccaaagcctatgccgaagccgaagccta
agcctaagcctatgcctaagcctaagcctaagcttaagcttaagcctaagcccatgcctt
tcccaaagcctaagcctaaacttaaacccaagactaagcctaagaagaatcctgtgccca
tcctgaaaccaataccaccaaaaaaagaaacttacatctccccaacccatctgaaattaa
actgttgtttgcaaaaaaatataatttcacatgtttccgtgaaagtatgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTAAATCTAAACCTAAGTCTGA 113 577 482 Antisense
ATCTAAACCTAAGTCTGAGCCTTTC 149 31 489 Antisense
ATGCCTAAGCCCATGCCTAAGCATA 492 39 661 Antisense
AGCCCATGCCTAAGCATAAGCCTAA 691 81 668 Antisense
TAAACCCAAGACTAAGCCTAAGAAG 331 637 864 Antisense
AAGCCTAAGAAGAATCCTGTGCCCA 314 149 877 Antisense
CCTAAGAAGAATCCTGTGCCCATCC 529 265 880 Antisense
TCTCCCCAACCCATCTGAAATTAAA 98 609 938 Antisense
CCCCAACCCATCTGAAATTAAACTG 549 261 941 Antisense
ACCCATCTGAAATTAAACTGTTGTT 653 87 946 Antisense
CACATGTTTCCGTGAAAGTATGCTT 611 195 989 Antisense
Sequence Source Affymetrix Proprietary Database