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[193480_at] Arabidopsis DNA-damage-repair protein D11 like

Description F58B3.7 /REP_DB=WormBase Gene ID /WP=CE06009 /TR=Q20966 /GB=CAA97799.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Arabidopsis DNA-damage-repair protein D11 like
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 82      6grp_total > 75      4grp_total > 08      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 333.9
(-0.8)
P 		282.1
(-3)
P 		294.6
(-2.5)
P 		420.8
(3)
P 		139
B 260.3
(-3)
P 		303.8
(3)
P 		274.7
(-1)
P 		290.8
(1.2)
P 		44
C 294.8
(-3)
P 		299.1
(-2.7)
P 		368.7
(3)
P 		299.7
(-2.6)
P 		74
avr 296.3
(-2.8) 		295
(-3) 		312.7
(-0.5) 		337.1
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 266.1
(-2.3)
P 		249.4
(-3)
P 		313.9
(-0.4)
P 		370.8
(1.9)
P 		397.3
(3)
P 		327.4
(0.2)
P 		148
B 288.8
(-3)
P 		387
(1.2)
P 		331
(-1.2)
P 		385.1
(1.1)
P 		325.4
(-1.4)
P 		428.2
(3)
P 		139
C 350.5
(-0.5)
P 		338.2
(-0.9)
P 		359.2
(-0.2)
P 		447.7
(3)
P 		280.3
(-3)
P 		403.1
(1.4)
P 		167
avr 301.8
(-3) 		324.9
(-1.6) 		334.7
(-1) 		401.2
(3) 		334.3
(-1) 		386.2
(2.1) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 121.6
(3)
P 		61.2
(-3)
P 		77
(-1.4)
P 		61.6
(-3)
P 		60
B 83
(3)
P 		75
(0.7)
P 		63.7
(-2.5)
P 		62
(-3)
P 		21
C 97.6
(0.6)
P 		86
(-0.3)
P 		128.5
(3)
P 		50.5
(-3)
P 		78
avr 100.7
(3) 		74.1
(-0.7) 		89.7
(1.5) 		58
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 49
(-3)
P 		88.7
(0.4)
P 		68.4
(-1.4)
P 		94.1
(0.8)
P 		119.9
(3)
P 		79.7
(-0.4)
P 		71
B 100.5
(-1.5)
P 		128.8
(0.7)
P 		80.4
(-3)
P 		102
(-1.4)
P 		132.2
(0.9)
P 		159.7
(3)
P 		79
C 129.9
(2.3)
P 		103.2
(-1.2)
P 		91.4
(-2.8)
P 		90
(-3)
P 		90.7
(-2.9)
P 		134.9
(3)
P 		45
avr 93.1
(-1.3) 		106.9
(0.6) 		80.1
(-3) 		95.4
(-0.9) 		114.3
(1.6) 		124.8
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8742
Sequence Type Exemplar sequence
Representative Public ID F58B3.7 NCBI
Target Description F58B3.7 /REP_DB=WormBase Gene ID /WP=CE06009 /TR=Q20966 /GB=CAA97799.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Arabidopsis DNA-damage-repair protein D11 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069797 NCBI Caenorhabditis elegans F58B3.7 (F58B3.7) mRNA, complete cds. 11/11 None
SNAP00000008577 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11638289:11639971:1 11/11 None
GENEFINDER00000008587 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11638289:11639971:1 11/11 None
F58B3.7 ENSEMBL cdna:known chromosome:CEL140:IV:11638286:11640048:1 gene:F58B3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11638294-11639977(+) 100.0 100.0
Public Domain and Genome References
Gene Title Arabidopsis DNA-damage-repair protein D11 like
Ensembl F58B3.7
Entrez Gene 178091 Entrez gene
SwissProt Q20966 EMBL-EBI
WormBase CE06009 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261808_AT DNA-damage-repair/toleration protein, chloroplast (DRT111) at
ATGENOME1:16572_AT DNA-damage-repair/toleration protein, chloroplast (DRT111) at
CANINE:1588253_AT similar to RNA binding motif protein 17 cfa
CANINE_2:CFA.3967.1.A1_AT similar to RNA binding motif protein 17 cfa
CANINE_2:CFAAFFX.8758.1.S1_S_AT similar to RNA binding motif protein 17 cfa
CHICKEN:GGA.12459.1.S1_AT RNA binding motif protein 17 gga
CHICKEN:GGA.12459.1.S1_S_AT RNA binding motif protein 17 gga
HG-U95AV2:31630_AT RNA binding motif protein 17 hs
HG-U133_PLUS_2:224781_S_AT RNA binding motif protein 17 hs
HG-U133B:224781_S_AT RNA binding motif protein 17 hs
HG-U133_PLUS_2:221309_AT RNA binding motif protein 17 hs
HG-U133A:221309_AT RNA binding motif protein 17 hs
HG-FOCUS:221309_AT RNA binding motif protein 17 hs
HG-U133A_2:221309_AT RNA binding motif protein 17 hs
HU35KSUBA:RC_AA280623_AT RNA binding motif protein 17 hs
HU35KSUBC:RC_AA027227_AT RNA binding motif protein 17 hs
U133_X3P:G5454081_3P_AT RNA binding motif protein 17 hs
U133_X3P:HS.107001.1.S1_3P_AT RNA binding motif protein 17 hs
U133_X3P:HS.107001.0.S2_3P_AT RNA binding motif protein 17 hs
U133_X3P:HS.107001.0.S1_3P_A_AT RNA binding motif protein 17 hs
U133_X3P:221309_3P_AT RNA binding motif protein 17 hs
HG-U133_PLUS_2:224780_AT RNA binding motif protein 17 hs
HG-U133B:224780_AT RNA binding motif protein 17 hs
HG-U133_PLUS_2:225751_AT RNA binding motif protein 17 hs
HG-U133B:225751_AT RNA binding motif protein 17 hs
HG-U95B:49221_S_AT RNA binding motif protein 17 hs
HG-U95B:56356_AT RNA binding motif protein 17 hs
HU35KSUBA:AA093875_AT RNA binding motif protein 17 hs
MU11KSUBA:AA466028_S_AT RNA binding motif protein 17 mm
MG-U74AV2:94081_AT RNA binding motif protein 17 mm
MOE430A:1452691_AT RNA binding motif protein 17 mm
MOUSE430A_2:1452691_AT RNA binding motif protein 17 mm
MOUSE430_2:1452691_AT RNA binding motif protein 17 mm
MOE430B:1445745_AT RNA binding motif protein 17 mm
MOUSE430_2:1445745_AT RNA binding motif protein 17 mm
RG-U34C:RC_AI072014_AT RNA binding motif protein 17 (predicted) rn
RAE230A:1388355_AT RNA binding motif protein 17 (predicted) rn
RAT230_2:1388355_AT RNA binding motif protein 17 (predicted) rn
RAE230B:1396185_AT RNA binding motif protein 17 (predicted) rn
RAT230_2:1396185_AT RNA binding motif protein 17 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97799 Hypothetical protein F58B3.7 [Caenorhabditis elegans] ref|NP_502198.1| F58B3.7 [Caenorhabditis elegans] 0.0
blast CAE62083 Hypothetical protein CBG06106 [Caenorhabditis briggsae] 1.0E-157
blast AAI06250 Unknown (protein for MGC:130690) [Xenopus laevis] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 4.3E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.2E-8
Sequence
Target Sequence 
>C. ELEGANS:193480_AT
tgctcatggaacccgaaccggaagtgattaaaaatacaaatgaaaaccaggatgagaagc
cacattcttcatttatgccaccaccttcatttcttcctgcttttggtaaagctacgagca
gaggactcggaattgctgcaaatattatgaaaagacatggatataaggaaggtgcaggac
ttggaaaatccgaacaaggaatgagtactgctttatcaattgagaaaactggagttcgtg
gtggaaatattgttgctgaagctccaaaggctccgacgttcgccactaattcgatggaag
cagtacaaaatgcaacgaagattcttcaattatggaatctgacggatttatcggaagttt
cgggtgaagaaggcaaaaaagaatttgctgatgagataaaagaagaaatggaaaaatgtg
gacaagttgtgaatgtgattgttcatgtggatgagtctcaagaagaggatcgccaagttc
gggtgtttgttgaattcaccaacaatgctcaagctatcaaagccttcgttatgatgaatg
gaagattctttggcggaagatccgtatcggctggtttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCATGGAACCCGAACCGGAAGT 479 577 515 Antisense
GGATGAGAAGCCACATTCTTCATTT 575 513 564 Antisense
CTTCATTTCTTCCTGCTTTTGGTAA 338 221 599 Antisense
AGAGGACTCGGAATTGCTGCAAATA 122 69 634 Antisense
TTGCTGAAGCTCCAAAGGCTCCGAC 270 701 767 Antisense
CCGACGTTCGCCACTAATTCGATGG 151 231 787 Antisense
AGAGGATCGCCAAGTTCGGGTGTTT 428 65 978 Antisense
GAATTCACCAACAATGCTCAAGCTA 396 323 1006 Antisense
GCTCAAGCTATCAAAGCCTTCGTTA 696 301 1021 Antisense
GAAGATTCTTTGGCGGAAGATCCGT 14 339 1055 Antisense
GAAGATCCGTATCGGCTGGTTTCCA 307 337 1070 Antisense
Sequence Source Affymetrix Proprietary Database