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[193477_s_at] pancreatic trypsin inhibitor (kunitz) protein

Description E01G6.1 /REP_DB=WormBase Gene ID /WP=CE03112 /TR=Q19021 /GB=CAA93531.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=pancreatic trypsin inhibitor (kunitz) protein
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      6grp_highest_nonorm > 82      6grp_total > 79      4grp_total > 49      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 885
1 2 3 4 range
A 76
(-3)
A 		960.9
(3)
P 		785.5
(1.8)
P 		103.9
(-2.8)
P 		885
B 95
(-3)
M 		872.7
(3)
P 		805.8
(2.5)
P 		112.1
(-2.9)
P 		778
C 86.5
(-3)
M 		863.9
(3)
P 		834.5
(2.8)
P 		141.7
(-2.6)
P 		777
avr 85.8
(-3) 		899.2
(3) 		808.6
(2.3) 		119.2
(-2.8) 		813

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 277
(-1.3)
P 		399.7
(1.8)
P 		210.2
(-3)
P 		322.6
(-0.2)
P 		391.1
(1.5)
P 		449
(3)
P 		239
B 355.4
(-1.1)
P 		402.4
(0.5)
P 		300.2
(-3)
P 		329.6
(-2)
P 		368.5
(-0.7)
P 		474.8
(3)
P 		175
C 335
(-0.9)
P 		478.9
(2.6)
P 		247.9
(-3)
P 		322.9
(-1.2)
P 		489.1
(2.8)
P 		497.1
(3)
P 		249
avr 322.5
(-1.1) 		427
(1.7) 		252.8
(-3) 		325
(-1) 		416.2
(1.4) 		473.6
(3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 27.7
(-2.6)
A 		208.6
(3)
P 		205.3
(2.9)
P 		15.2
(-3)
P 		193
B 30.3
(-2.8)
M 		215.5
(3)
P 		186.7
(2.1)
P 		23.9
(-3)
P 		192
C 28.6
(-2.9)
M 		248.4
(2)
P 		290.8
(3)
P 		23.9
(-3)
P 		267
avr 28.9
(-2.8) 		224.2
(2.9) 		227.6
(3) 		21
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 51.1
(-2.7)
P 		142.1
(3)
P 		45.8
(-3)
P 		81.8
(-0.8)
P 		118
(1.5)
P 		109.3
(1)
P 		96
B 123.7
(-0.1)
P 		133.9
(0.5)
P 		72.9
(-3)
P 		87.3
(-2.2)
P 		149.7
(1.4)
P 		177.1
(3)
P 		104
C 124.2
(0.5)
P 		146.1
(1.8)
P 		63.1
(-3)
P 		64.9
(-2.9)
P 		158.3
(2.5)
P 		166.4
(3)
P 		103
avr 99.7
(-0.4) 		140.7
(2.3) 		60.6
(-3) 		78
(-1.8) 		142
(2.4) 		150.9
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193477_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16480
Sequence Type Exemplar sequence
Representative Public ID E01G6.1 NCBI
Target Description E01G6.1 /REP_DB=WormBase Gene ID /WP=CE03112 /TR=Q19021 /GB=CAA93531.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=pancreatic trypsin inhibitor (kunitz) protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077643 NCBI Caenorhabditis elegans E01G6.1 (E01G6.1) mRNA, complete cds. 11/11 None
SNAP00000024774 ENSEMBL cdna:SNAP chromosome:CEL140:X:12260805:12266238:1 11/11 None
GENEFINDER00000024780 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12260805:12266238:1 11/11 None
E01G6.1 ENSEMBL cdna:known chromosome:CEL140:X:12261343:12266458:1 gene:E01G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12261342-12266238(+) 100.0 100.0
Public Domain and Genome References
Gene Title pancreatic trypsin inhibitor (kunitz) protein
Ensembl E01G6.1
Entrez Gene 181387 Entrez gene
SwissProt Q19021 EMBL-EBI
WormBase CE03112 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93531 Hypothetical protein E01G6.1 [Caenorhabditis elegans] ref|NP_510044.1| E01G6.1 [Caenorhabditis elegans] 0.0
blast CAE69909 Hypothetical protein CBG16264 [Caenorhabditis briggsae] 0.0
blast NP_497206 F30H5.3 [Caenorhabditis elegans] gb|AAA68408.1| Hypothetical protein F30H5.3 [Caenorhabditis elegans] 1.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.6E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.3E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.4E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.1E-21
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.6E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.3E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.4E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.1E-21
Sequence
Target Sequence 
>C. ELEGANS:193477_S_AT
gggcaaattgattgccccccaggattcttcaatatggacggaaagtgcttgaagatctta
tttgctggtcaaaaaggatgcatttctgatgaacagtgcagttctcgtgaagcaaactca
acatgtgacaatggatattgtatctgtccaactgacaagccactggtccatggaggaaaa
tgtattgctacgtgcccagaaggattctccaatattgctggaagatgctacgacccaaca
acagtgattttcatggactctgttgacgaaagaaagaacggaactattggaggatattgt
atggagactttgatcgaggaaaagagatgtttagttaaaaatagttattgttcggagaaa
acaataacgtgcacctgccagcttggatatgaccttgagatgaactttgatgataaggac
gataagggaaaatgcaaaaagaatagtgactcaaaataccatgacttgaaagcaaccact
gcatctccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCAAATTGATTGCCCCCCAGGAT 214 493 3565 Antisense
GTGCAGTTCTCGTGAAGCAAACTCA 473 479 3660 Antisense
GGATATTGTATCTGTCCAACTGACA 339 509 3697 Antisense
CCAACTGACAAGCCACTGGTCCATG 155 277 3712 Antisense
TGCTACGTGCCCAGAAGGATTCTCC 359 563 3750 Antisense
ATTGCTGGAAGATGCTACGACCCAA 115 3 3778 Antisense
TACGACCCAACAACAGTGATTTTCA 669 647 3793 Antisense
GTGATTTTCATGGACTCTGTTGACG 664 483 3808 Antisense
GAAAACAATAACGTGCACCTGCCAG 197 355 3921 Antisense
GCACCTGCCAGCTTGGATATGACCT 511 315 3935 Antisense
TGAAAGCAACCACTGCATCTCCATT 469 571 4031 Antisense
Sequence Source Affymetrix Proprietary Database