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[193476_at] guanine nucleotide-binding protein

Description C34D1.3 /REP_DB=WormBase Gene ID /WP=CE08571 /GEN=odr-3 /TR=Q18434 /GB=CAB01489.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=guanine nucleotide-binding protein
Cluster 6grp_total > 25      4grp_total > 22      6grp_cgc > 24      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 121.3
(2)
A 		52.2
(-1.3)
A 		17.6
(-3)
A 		141
(3)
A 		123
B 118.5
(3)
A 		73
(-0.2)
A 		32.7
(-3)
A 		73.4
(-0.2)
M 		86
C 106.6
(1.6)
P 		44.9
(-1.3)
A 		8.6
(-3)
A 		136.6
(3)
P 		128
avr 115.5
(2.9) 		56.7
(-0.7) 		19.6
(-3) 		117
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 103.5
(3)
A 		84
(1.6)
A 		89.3
(2)
A 		19.7
(-3)
A 		20.4
(-2.9)
A 		23.6
(-2.7)
A 		84
B 94.4
(3)
A 		94.5
(3)
A 		51.3
(0)
A 		31.4
(-1.3)
A 		6.7
(-3)
A 		47.3
(-0.2)
A 		88
C 124.6
(3)
P 		70.9
(0.2)
A 		32.7
(-1.8)
A 		12.2
(-2.9)
A 		10.3
(-3)
A 		40.3
(-1.4)
A 		114
avr 107.5
(3) 		83.1
(1.5) 		57.8
(-0.1) 		21.1
(-2.5) 		12.5
(-3) 		37.1
(-1.4) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 44.2
(3)
A 		11.3
(-2)
A 		4.6
(-3)
A 		20.6
(-0.6)
A 		40
B 37.8
(3)
A 		18
(-0.9)
A 		7.6
(-3)
A 		15.7
(-1.4)
M 		30
C 35.3
(3)
P 		12.9
(-1.2)
A 		3
(-3)
A 		23
(0.7)
P 		32
avr 39.1
(3) 		14.1
(-1.4) 		5.1
(-3) 		19.8
(-0.4) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 19.1
(0.4)
A 		29.9
(3)
A 		19.4
(0.5)
A 		5
(-3)
A 		6.2
(-2.7)
A 		5.7
(-2.8)
A 		25
B 32.9
(3)
A 		31.4
(2.7)
A 		12.5
(-1.1)
A 		8.3
(-1.9)
A 		2.7
(-3)
A 		17.6
(-0)
A 		30
C 46.2
(3)
P 		21.6
(-0.4)
A 		8.3
(-2.2)
A 		2.5
(-3)
A 		3.3
(-2.9)
A 		13.5
(-1.5)
A 		44
avr 32.7
(3) 		27.6
(1.9) 		13.4
(-1) 		5.3
(-2.7) 		4.1
(-3) 		12.3
(-1.3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12865
Sequence Type Exemplar sequence
Representative Public ID C34D1.3 NCBI
Target Description C34D1.3 /REP_DB=WormBase Gene ID /WP=CE08571 /GEN=odr-3 /TR=Q18434 /GB=CAB01489.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=guanine nucleotide-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073889 NCBI Caenorhabditis elegans ODoRant response abnormal family member (odr-3) (odr-3) mRNA, complete cds. 11/11 None
SNAP00000025075 ENSEMBL cdna:SNAP chromosome:CEL140:V:13249474:13252125:-1 11/11 None
GENEFINDER00000025082 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13249474:13252125:-1 11/11 None
C34D1.3 ENSEMBL cdna:known chromosome:CEL140:V:13249474:13252125:-1 gene:C34D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13249473-13252125(-) 100.0 100.0
Public Domain and Genome References
Gene Title guanine nucleotide-binding protein
Gene Symbol odr-3
Ensembl C34D1.3
Entrez Gene 179806 Entrez gene
SwissProt Q18434 EMBL-EBI
WormBase CE08571 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01489 Hypothetical protein C34D1.3 [Caenorhabditis elegans] ref|NP_506290.1| ODoRant response abnormal family member (odr-3) [Caenorhabditis elegans] gb|AAG32095.1| heterotrimeric G protein alpha subunit [Caenorhabditis elegans] sp|Q18434|GPA17_CAEEL Guanine nucleotide-binding protein alpha-17 subunit (Odorant response abnormal protein 3) 0.0
blast AAN78250 ODR-3 [Caenorhabditis briggsae] sp|Q86FX7|GPA17_CAEBR Guanine nucleotide-binding protein alpha-17 subunit (Odorant response abnormal protein 3) emb|CAE64644.1| Hypothetical protein CBG09409 [Caenorhabditis briggsae] 0.0
blast AAN78238 ODR-3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001019 EMBL-EBI Guanine nucleotide binding protein (G-protein), alpha subunit 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193476_AT
atctgaacctgggtatcggccaaacgatcaagatattctttattctcgagtggcaacaac
tggtgtcgtagaagttaaatttaagatcaaggagcttgacttccgtgtatttgatgtggg
aggtcaacgatctgaaagacgaaagtggatccattgctttgataatgtcgaatctattat
tttcattactgctatttccgaatatgatcaagttcttttcgaagatgaaacgacgaaccg
aatgatcgagtccatgcagcttttcaattcaatttgtaattcaacttggttcctttcaac
agcaatgattctttttatgaataaaaaagatttatttatggaaaagattcaacgagtcaa
tattacgactgcattcccagattatgaaggtggtcaaaactatgaggaggccgtctcgtt
catcaagcagaaatttgctgaattgaacttgaatcctgataaaaagacaatttatatgca
tgaaacttgcgctacagacactaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGAACCTGGGTATCGGCCAAAC 106 31 504 Antisense
GATATTCTTTATTCTCGAGTGGCAA 266 427 535 Antisense
GAGTGGCAACAACTGGTGTCGTAGA 490 401 551 Antisense
GAGCTTGACTTCCGTGTATTTGATG 266 387 595 Antisense
TTATTTTCATTACTGCTATTTCCGA 562 677 680 Antisense
GATCGAGTCCATGCAGCTTTTCAAT 675 417 747 Antisense
ATTCAACTTGGTTCCTTTCAACAGC 251 7 782 Antisense
GTCAATATTACGACTGCATTCCCAG 625 461 859 Antisense
AACTATGAGGAGGCCGTCTCGTTCA 435 137 901 Antisense
GCCGTCTCGTTCATCAAGCAGAAAT 185 285 913 Antisense
GAAACTTGCGCTACAGACACTAATC 228 357 985 Antisense
Sequence Source Affymetrix Proprietary Database