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[193475_s_at] succinate dehydrogenase flavoprotein subunit

Description C03G5.1 /REP_DB=WormBase Gene ID /WP=CE03917 /TR=Q17616 /GB=AAB37034.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=succinate dehydrogenase flavoprotein subunit
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 61      6grp_total > 31      4grp_total > 52      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 403.4
(2.6)
P 		415.9
(3)
P 		374
(1.7)
P 		228.5
(-3)
P 		187
B 411.2
(3)
P 		355.7
(1.6)
P 		317.8
(0.7)
P 		171
(-3)
P 		240
C 351.5
(3)
P 		332.2
(2.2)
P 		330.8
(2.2)
P 		203.5
(-3)
P 		148
avr 388.7
(3) 		367.9
(2.3) 		340.9
(1.5) 		201
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 453.6
(1.6)
P 		297.4
(-1.2)
P 		527.7
(3)
P 		289.3
(-1.4)
P 		395.7
(0.6)
P 		201.5
(-3)
P 		326
B 498.6
(1.3)
P 		617.9
(3)
P 		602
(2.8)
P 		446.5
(0.5)
P 		325.6
(-1.3)
P 		208.5
(-3)
P 		409
C 286.7
(-1.3)
P 		577.5
(3)
P 		380.9
(0.1)
P 		435.1
(0.9)
P 		257.7
(-1.7)
P 		173.4
(-3)
P 		404
avr 413
(1.2) 		497.6
(2.9) 		503.5
(3) 		390.3
(0.8) 		326.3
(-0.4) 		194.5
(-3) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 146.9
(3)
P 		90.3
(0)
P 		97.8
(0.4)
P 		33.4
(-3)
P 		114
B 131.1
(3)
P 		87.8
(0.3)
P 		73.7
(-0.6)
P 		36.4
(-3)
P 		95
C 116.3
(3)
P 		95.5
(1.5)
P 		115.3
(2.9)
P 		34.3
(-3)
P 		82
avr 131.4
(3) 		91.2
(0.5) 		95.6
(0.8) 		34.7
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 83.6
(-0.1)
P 		105.8
(1.8)
P 		114.9
(2.6)
P 		73.4
(-0.9)
P 		119.4
(3)
P 		49.1
(-3)
P 		70
B 173.5
(1.5)
P 		205.7
(3)
P 		146.2
(0.2)
P 		118.3
(-1.1)
P 		132.3
(-0.4)
P 		77.7
(-3)
P 		128
C 106.3
(-0.5)
P 		176.2
(3)
P 		96.9
(-1)
P 		87.5
(-1.5)
P 		83.4
(-1.7)
P 		58
(-3)
P 		118
avr 121.1
(0.5) 		162.6
(3) 		119.3
(0.4) 		93.1
(-1.1) 		111.7
(-0) 		61.6
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193475_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16314
Sequence Type Exemplar sequence
Representative Public ID C03G5.1 NCBI
Target Description C03G5.1 /REP_DB=WormBase Gene ID /WP=CE03917 /TR=Q17616 /GB=AAB37034.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=succinate dehydrogenase flavoprotein subunit
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077045 NCBI Caenorhabditis elegans C03G5.1 (C03G5.1) mRNA, complete cds. 11/11 A 
C03G5.1.1 ENSEMBL cdna:known chromosome:CEL140:X:8542804:8545958:-1 gene:C03G5.1 11/11 A 
C03G5.1.2 ENSEMBL cdna:known chromosome:CEL140:X:8543147:8546020:-1 gene:C03G5.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016412 8/11 Cross Hyb Matching Probes None
GENEFINDER00000016419 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8543145-8545951(-) 100.0 100.0
Public Domain and Genome References
Gene Title succinate dehydrogenase flavoprotein subunit
Ensembl C03G5.1
Entrez Gene 181108 Entrez gene
SwissProt Q09508 EMBL-EBI
WormBase CE03917 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247060_AT succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial / flavoprotein subunit of complex II at
ATGENOME1:19894_AT succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial / flavoprotein subunit of complex II at
CANINE_2:CFA.18281.1.S1_AT similar to Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor (Fp) (Flavoprotein subunit of complex II) cfa
CANINE_2:CFA.18281.1.S1_S_AT similar to Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor (Fp) (Flavoprotein subunit of complex II) cfa
DROSOPHILA_2:1629086_S_AT Succinyl coenzyme A synthetase flavoprotein subunit dm
DROSGENOME1:152538_AT Succinyl coenzyme A synthetase flavoprotein subunit dm
CHICKEN:GGA.993.1.S1_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) gga
HG-U133A:201093_X_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U133_PLUS_2:201093_X_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U133A_2:201093_X_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HU35KSUBA:H09364_S_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HU35KSUBD:RC_AA400428_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HUGENEFL:L21936_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
U133_X3P:G4759079_3P_S_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
U133_X3P:HS.469.2.S1_3P_S_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
U133_X3P:222021_3P_X_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U133A_2:222021_X_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-FOCUS:222021_X_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U133_PLUS_2:222021_X_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U133A:222021_X_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U133_PLUS_2:230077_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U133B:230077_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U95AV2:34826_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U95C:61291_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U95D:74498_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
HG-U95C:62684_AT Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) hs
MOE430A:1426688_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) mm
MOUSE430A_2:1426688_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) mm
MOUSE430_2:1426688_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) mm
MOUSE430A_2:1426689_S_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) mm
MOUSE430_2:1426689_S_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) mm
MOE430A:1426689_S_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) mm
MU11KSUBB:W53390_F_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) mm
MG-U74AV2:94080_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) mm
MG-U74CV2:138186_AT Succinate dehydrogenase complex, subunit A, flavoprotein (Fp), mRNA (cDNA clone MGC:30357 IMAGE:5067510) mm
MOUSE430_2:1445317_AT Succinate dehydrogenase complex, subunit A, flavoprotein (Fp), mRNA (cDNA clone MGC:30357 IMAGE:5067510) mm
MOE430B:1445317_AT Succinate dehydrogenase complex, subunit A, flavoprotein (Fp), mRNA (cDNA clone MGC:30357 IMAGE:5067510) mm
MU19KSUBC:TC35011_AT Succinate dehydrogenase complex, subunit A, flavoprotein (Fp), mRNA (cDNA clone MGC:30357 IMAGE:5067510) mm
MU19KSUBC:TC40940_AT Succinate dehydrogenase complex, subunit A, flavoprotein (Fp), mRNA (cDNA clone MGC:30357 IMAGE:5067510) mm
RG-U34A:RC_AA800250_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) rn
RG-U34B:RC_AA925554_G_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) rn
RG-U34B:RC_AA925554_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) rn
RAE230A:1367678_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) rn
RAT230_2:1367678_AT succinate dehydrogenase complex, subunit A, flavoprotein (Fp) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15036 disulfide oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37034 Hypothetical protein C03G5.1 [Caenorhabditis elegans] ref|NP_509446.1| C03G5.1 [Caenorhabditis elegans] sp|Q09508|DHSA_CAEEL Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor (FP) (Flavoprotein subunit of complex II) 0.0
blast BAA21637.1 flavoprotein subunit of complex II [Caenorhabditis elegans] 0.0
blast CAE74915 Hypothetical protein CBG22795 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004112 EMBL-EBI Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal 3.8E-94
Pfam IPR003953 EMBL-EBI Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193475_S_AT
gaacacctctgccggagttggagttccagaacttccaaagaacgccggagaggcctccgt
tgccaacattgacaaactccgtcacaacaagggagacatctcaactgccgagcttcgtct
caccatgcaaaagtcaatgcaaaaccacgccgccgtattccgtcgtggagatatcttgaa
ggagggagtcaaggtcttatccaagttgtacaaggaccaagctcatctcaacgttgctga
caagggactcgtctggaactcggatctcattgagaccctcgagctccagaacttgctcat
taacgctacccaaaccatcgttgccgctgagaacagagaggaatcccgtggagcccacgc
tcgtgacgacttccctgacagactcgacgagctcgactacagcaagccattggagggaca
gaccaagaaggagttgaaggaccactggcgcaagcattcgatcatcagatcgaacatcga
aacaggagaggtttcacttgactatcgtccagtcattgacactactctcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACCTCTGCCGGAGTTGGAGTT 673 349 1377 Antisense
AGCTTCGTCTCACCATGCAAAAGTC 458 77 1487 Antisense
CGCCGTATTCCGTCGTGGAGATATC 358 257 1527 Antisense
GTACAAGGACCAAGCTCATCTCAAC 357 461 1584 Antisense
TCGTCTGGAACTCGGATCTCATTGA 132 605 1625 Antisense
AGAACTTGCTCATTAACGCTACCCA 490 73 1664 Antisense
ACCATCGTTGCCGCTGAGAACAGAG 370 87 1690 Antisense
ACGAGCTCGACTACAGCAAGCCATT 427 93 1763 Antisense
GGCGCAAGCATTCGATCATCAGATC 68 543 1823 Antisense
GAGAGGTTTCACTTGACTATCGTCC 49 395 1862 Antisense
TCCAGTCATTGACACTACTCTCGAC 710 589 1884 Antisense
Sequence Source Affymetrix Proprietary Database