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[193470_at] 7TM chemoreceptor (srd-family)

Description Y45F10B.14 /REP_DB=WormBase Gene ID /WP=CE24286 /GEN=srd-10 /TR=Q9NAH9 /GB=CAB76733.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster 6grp_total > 44      4grp_total > 04      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 48.3
(-0.8)
A 		11.8
(-3)
A 		55.8
(-0.4)
A 		111.9
(3)
A 		100
B 52.9
(-2.1)
A 		51.3
(-2.2)
A 		42.1
(-3)
A 		112.7
(3)
A 		71
C 54.3
(-1.8)
A 		33.6
(-2.8)
A 		30.2
(-3)
A 		149.4
(3)
A 		119
avr 51.8
(-1.7) 		32.2
(-3) 		42.7
(-2.3) 		124.7
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 41.6
(1.1)
A 		13.1
(-2)
A 		59.3
(3)
A 		7.8
(-2.5)
A 		3.6
(-3)
A 		34.7
(0.4)
A 		56
B 37.2
(0)
A 		48.4
(1.4)
A 		61.9
(3)
M 		21.6
(-1.9)
A 		12.2
(-3)
A 		37
(-0)
A 		50
C 34.4
(-0.2)
A 		54.3
(1.5)
A 		71.1
(3)
A 		27.1
(-0.9)
A 		3.3
(-3)
A 		28.1
(-0.8)
A 		68
avr 37.7
(0.3) 		38.6
(0.3) 		64.1
(3) 		18.8
(-1.7) 		6.4
(-3) 		33.3
(-0.2) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 17.6
(3)
A 		2.6
(-3)
A 		14.6
(1.8)
A 		16.4
(2.5)
A 		15
B 16.9
(-0)
A 		12.7
(-1.8)
A 		9.8
(-3)
A 		24
(3)
A 		14
C 18
(0.2)
A 		9.7
(-3)
A 		10.5
(-2.7)
A 		25.2
(3)
A 		16
avr 17.5
(1.1) 		8.3
(-3) 		11.6
(-1.5) 		21.9
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.7
(0.4)
A 		4.7
(-1.2)
A 		12.9
(3)
A 		2
(-2.5)
A 		1.1
(-3)
A 		8.4
(0.7)
A 		12
B 13
(1.3)
A 		16.1
(3)
A 		15
(2.4)
M 		5.7
(-2.6)
A 		5
(-3)
A 		13.8
(1.8)
A 		11
C 12.8
(1.1)
A 		16.6
(2.5)
A 		18.1
(3)
A 		5.5
(-1.4)
A 		1.1
(-3)
A 		9.4
(-0.1)
A 		17
avr 11.2
(1.1) 		12.5
(1.7) 		15.3
(3) 		4.4
(-2.1) 		2.4
(-3) 		10.5
(0.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8544
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.14 NCBI
Target Description Y45F10B.14 /REP_DB=WormBase Gene ID /WP=CE24286 /GEN=srd-10 /TR=Q9NAH9 /GB=CAB76733.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM chemoreceptor (srd-family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070213 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-10) (srd-10) mRNA, complete cds. 11/11 None
SNAP00000007854 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13575027:13576709:1 11/11 None
GENEFINDER00000007866 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13575027:13576709:1 11/11 None
Y45F10B.14 ENSEMBL cdna:known chromosome:CEL140:IV:13575027:13576709:1 gene:Y45F10B.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13575032-13576715(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor (srd-family)
Gene Symbol srd-10
Ensembl Y45F10B.14
Entrez Gene 191800 Entrez gene
SwissProt Q9NAH9 EMBL-EBI
WormBase CE24286 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76733 Hypothetical protein Y45F10B.14 [Caenorhabditis elegans] ref|NP_502614.1| Serpentine Receptor, class D (delta) family member (srd-10) [Caenorhabditis elegans] 1.0E-170
blast CAB76733 Hypothetical protein Y45F10B.14 [Caenorhabditis elegans] ref|NP_502614.1| Serpentine Receptor, class D (delta) family member (srd-10) [Caenorhabditis elegans] 1.0E-163
blast CAE58585 Hypothetical protein CBG01751 [Caenorhabditis briggsae] 1.0E-147
blast CAE58585 Hypothetical protein CBG01751 [Caenorhabditis briggsae] 1.0E-141
blast AAK72081 Serpentine receptor, class d (delta) protein 12 [Caenorhabditis elegans] ref|NP_500836.1| Serpentine Receptor, class D (delta) family member (srd-12) [Caenorhabditis elegans] 8.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502614.1 8 7-29,39-61,68-90,95-117,126-148,183-205,231-253,268-290
Y45F10B.14 8 7-29,39-61,68-90,95-117,126-148,183-205,231-253,268-290
SNAP00000007854 7 10-32,39-61,88-110,119-141,176-198,224-246,261-283
GENEFINDER00000007866 8 7-29,39-61,68-90,95-117,126-148,183-205,231-253,268-290
Sequence
Target Sequence 
>C. ELEGANS:193470_AT
acgtatctaccatcattcttgcagttgatcctgtatcaatttgccgaatctgaaccattg
gcaatcattgcactccttcaaccatatcacccaaaatacaatttcacaggattaacagtc
agcggtgttgccgatattcgaagtgtttatgcattgtataaaattctacaaatgacagtt
atgactattccgattttctcaacgattttgtatttgagaaagaaaataattgataaacta
ctctatcgcggggtcaatatttccctgaacacgaaaagcttgcattcacaattgttaatg
gctctaacatatcaggcactacttccaactctctactcgatcaacgttgtaatgtacgta
ctggaacagtctggcatctatgcttctccttttttcgagaactttataatgtctggcttg
gttctaataccatttttctccccatttacttcatttttcttcttttctccttacaagcgt
attgtattaagaattttgatcaggaaattgaacaaacgccaagttgccatgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTATCTACCATCATTCTTGCAGT 374 93 412 Antisense
TTGGCAATCATTGCACTCCTTCAAC 195 709 469 Antisense
CAGTCAGCGGTGTTGCCGATATTCG 469 207 527 Antisense
CAGTTATGACTATTCCGATTTTCTC 686 205 587 Antisense
TAAACTACTCTATCGCGGGGTCAAT 56 637 645 Antisense
CGGGGTCAATATTTCCCTGAACACG 450 243 660 Antisense
CATATCAGGCACTACTTCCAACTCT 297 215 719 Antisense
AACTCTCTACTCGATCAACGTTGTA 285 141 738 Antisense
AACAGTCTGGCATCTATGCTTCTCC 445 137 776 Antisense
TCTTCTTTTCTCCTTACAAGCGTAT 354 617 869 Antisense
GAACAAACGCCAAGTTGCCATGTCA 118 353 921 Antisense
Sequence Source Affymetrix Proprietary Database