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[193469_at] galactoside 3(4)-L-fucosyltransferase (weak)

Description T05A7.5 /REP_DB=WormBase Gene ID /WP=CE04891 /TR=Q22202 /GB=AAA81114.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=galactoside 3(4)-L-fucosyltransferase (weak)
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 33      4grp_high_8_8 > 0      6grp_highest_nonorm > 80      6grp_total > 21      4grp_total > 31      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 291.9
(3)
P 		155.1
(-3)
P 		205.5
(-0.8)
P 		180.7
(-1.9)
P 		137
B 257.5
(3)
P 		228.6
(1.1)
A 		167.2
(-3)
A 		188.6
(-1.6)
P 		90
C 216.3
(-1.1)
P 		176
(-3)
M 		208.8
(-1.5)
P 		305.3
(3)
P 		129
avr 255.2
(3) 		186.6
(-3) 		193.8
(-2.4) 		224.9
(0.3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 194.3
(-1.3)
P 		202.4
(-0.7)
P 		254.5
(3)
P 		248
(2.5)
P 		213
(0)
P 		171
(-3)
P 		84
B 224.3
(0.8)
P 		272.5
(3)
P 		209.4
(0.1)
P 		231
(1.1)
P 		206.2
(-0.1)
P 		143.1
(-3)
P 		129
C 191.8
(-1)
P 		308.4
(3)
P 		214.9
(-0.2)
P 		175
(-1.5)
P 		131.3
(-3)
P 		148.7
(-2.4)
P 		177
avr 203.5
(-0.2) 		261.1
(3) 		226.3
(1) 		218
(0.6) 		183.5
(-1.4) 		154.3
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 106.3
(3)
P 		33.7
(-2.5)
P 		53.7
(-1)
P 		26.5
(-3)
P 		80
B 82.1
(3)
P 		56.5
(-0.5)
A 		38.7
(-3)
A 		40.2
(-2.8)
P 		43
C 71.6
(2.7)
P 		50.6
(-3)
M 		72.8
(3)
P 		51.5
(-2.8)
P 		22
avr 86.7
(3) 		46.9
(-2) 		55.1
(-1) 		39.4
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 35.8
(-3)
P 		72
(3)
P 		55.4
(0.2)
P 		62.9
(1.5)
P 		64.3
(1.7)
P 		41.6
(-2)
P 		36
B 78
(1.1)
P 		90.7
(3)
P 		50.9
(-3)
P 		61.2
(-1.4)
P 		83.8
(2)
P 		53.4
(-2.6)
P 		40
C 71.1
(0.7)
P 		94.1
(3)
P 		54.7
(-1)
P 		35.2
(-3)
P 		42.5
(-2.3)
P 		49.8
(-1.5)
P 		59
avr 61.6
(-0.9) 		85.6
(3) 		53.7
(-2.1) 		53.1
(-2.2) 		63.5
(-0.6) 		48.3
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193469_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4799
Sequence Type Exemplar sequence
Representative Public ID T05A7.5 NCBI
Target Description T05A7.5 /REP_DB=WormBase Gene ID /WP=CE04891 /TR=Q22202 /GB=AAA81114.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=galactoside 3(4)-L-fucosyltransferase (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062422 NCBI Caenorhabditis elegans FUcosyl Transferase family member (fut-6) (fut-6) mRNA, complete cds. 11/11 None
SNAP00000043910 ENSEMBL cdna:SNAP chromosome:CEL140:II:4653375:4655919:-1 11/11 None
GENEFINDER00000043926 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4653293:4655919:-1 11/11 None
T05A7.5 ENSEMBL cdna:known chromosome:CEL140:II:4653190:4655921:-1 gene:T05A7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4653771-4667466(-) 99.54 100.0
Public Domain and Genome References
Gene Title galactoside 3(4)-L-fucosyltransferase (weak)
Gene Symbol fut-6
Ensembl T05A7.5
Entrez Gene 188084 Entrez gene
SwissProt Q22202 EMBL-EBI
WormBase CE32206 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.6082.1.S1_S_AT fucosyltransferase 9 (alpha (1,3) fucosyltransferase) cfa
HG-U133_PLUS_2:207696_AT fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
HG-U133A:207696_AT fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
HG-FOCUS:207696_AT fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
HG-U133A_2:207696_AT fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
HG-U95AV2:32008_AT fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
U133_X3P:G5729831_3P_AT fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
HG-U133_PLUS_2:216185_AT Fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
HG-U133A_2:216185_AT Fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
HG-U133A:216185_AT Fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
U133_X3P:HS.306976.0.S1_3P_AT Fucosyltransferase 9 (alpha (1,3) fucosyltransferase) hs
MOE430A:1450771_AT fucosyltransferase 9 mm
MOUSE430A_2:1450771_AT fucosyltransferase 9 mm
MOUSE430_2:1450771_AT fucosyltransferase 9 mm
MG-U74AV2:95328_AT fucosyltransferase 9 mm
MG-U74BV2:115456_AT fucosyltransferase 9 mm
MG-U74BV2:105675_AT fucosyltransferase 9 mm
MG-U74BV2:115455_AT fucosyltransferase 9 mm
MOE430B:1435308_AT fucosyltransferase 9 mm
MOUSE430_2:1435308_AT fucosyltransferase 9 mm
MOE430B:1457409_AT fucosyltransferase 9 mm
MOUSE430_2:1457409_AT fucosyltransferase 9 mm
RAE230A:1369258_AT fucosyltransferase 9 rn
RAT230_2:1369258_AT fucosyltransferase 9 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8417 fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494823 FUcosyl Transferase family member (fut-6) [Caenorhabditis elegans] emb|CAG32980.1| alpha1,3-fucosyltransferase [Caenorhabditis elegans] gb|AAA81114.2| Fucosyl transferase protein 6 [Caenorhabditis elegans] 0.0
blast CAE67845 Hypothetical protein CBG13432 [Caenorhabditis briggsae] 0.0
blast NP_494372 FUcosyl Transferase family member (fut-4) [Caenorhabditis elegans] emb|CAD43602.1| alpha-1->3-fucosyltransferase homologue [Caenorhabditis elegans] gb|AAF39933.2| Fucosyl transferase protein 4 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001503 EMBL-EBI Glycosyl transferase, family 10 4.9E-53
Pfam IPR001503 EMBL-EBI Glycosyl transferase, family 10 1.3E-49
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494823.2 1 13-35
T05A7.5 1 13-35
SNAP00000043910 1 13-35
GENEFINDER00000043926 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:193469_AT
gtgctatggtctctcgaaagtccgaccaatgacatgttccgtccggatagtcacatgatc
aattggacaatgacctacagaactgattccgatgtctgggcaccatatggtacaattgtg
aagctgaaaaatccagtggaagttgacctgaatgcaatttgggagggaaaaacaaaaact
gccacgtggcttgcttcaaactgtattactcaaaatcatcggttcgatttgatcaagaaa
attattgataatggatttgaaattgatatttggggcaattgtggaaaacaagtctcccaa
tgcgctggagtggacaaccaggaatcgccttgcgtgttggaattgatcaaaccttacaag
ttttacatttctatggaaaactctaattgtaaggattacgttactgagaaattctggaaa
gctttaaacgatcgaatgacaattccaattgtccttgcgaggaagtactataaggatttg
ggagtcccggactctgcgtacattgctgtggatgactacgcaactttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTATGGTCTCTCGAAAGTCCGA 645 479 4357 Antisense
GTCCGACCAATGACATGTTCCGTCC 104 477 4376 Antisense
GTTCCGTCCGGATAGTCACATGATC 437 441 4392 Antisense
AGAACTGATTCCGATGTCTGGGCAC 667 73 4435 Antisense
CCACGTGGCTTGCTTCAAACTGTAT 234 275 4538 Antisense
AAAACAAGTCTCCCAATGCGCTGGA 56 131 4641 Antisense
GACAACCAGGAATCGCCTTGCGTGT 502 363 4669 Antisense
ACAATTCCAATTGTCCTTGCGAGGA 38 115 4795 Antisense
GATTTGGGAGTCCCGGACTCTGCGT 341 427 4831 Antisense
GACTCTGCGTACATTGCTGTGGATG 58 375 4846 Antisense
GCTGTGGATGACTACGCAACTTTAG 341 295 4861 Antisense
Sequence Source Affymetrix Proprietary Database